Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq7767 262 4e-65
seq7786 120 3e-22
seq7842 111 1e-19
seq7870 102 8e-17
>seq7767
Length=50048226
Score = 262 bits (290), Expect = 4e-65
Identities = 609/904 (67%), Gaps = 28/904 (3%)
Strand=Plus/Minus
Query 11320 ATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTT 11379
||||| | ||| |||||| | ||||| |||| |||| || ||| ||| | ||| ||
Sbjct 16036764 ATTTGACATCACTCCCATCCTCTGATACTCACCTACTC-TC-TTCTCAAAGA--AGT-TT 16036710
Query 11380 ACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTC 11439
||||| ||||| |||| |||||| ||| ||| ||||| | ||| |||| || || |
Sbjct 16036709 CCCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCC 16036650
Query 11440 ACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACA 11499
| |||||| ||| | | || | ||| || || || ||| |||| ||||||
Sbjct 16036649 AAAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGT 16036590
Query 11500 ACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATT 11559
|||||||| || || || | || || | | | || | ||| ||| |||||
Sbjct 16036589 GCAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCG 16036530
Query 11560 AACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTT 11619
||| |||| ||| ||||| | | | | ||| || ||| || | | |||||
Sbjct 16036529 AACGGCATTAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGTTT 16036470
Query 11620 AAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGA 11679
||||| | || ||||| ||||| |||||||| || ||||| || || |||||||| ||
Sbjct 16036469 GAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGA 16036410
Query 11680 AAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACC 11739
||| | || ||||||| | ||||| || | ||| ||||| | ||||| |||||
Sbjct 16036409 AAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACC 16036350
Query 11740 AGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA----C 11793
||||||||| ||||| |||||||| ||||| | || || | ||| || || || |
Sbjct 16036349 AGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTC 16036290
Query 11794 CTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853
|||| | || |||| | |||||| || || ||||| ||||| || ||||||
Sbjct 16036289 TTTGTCCCCAG---TCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGT 16036233
Query 11854 TTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911
|| | ||||| | | |||| | ||||| | |||| | ||||| || || ||
Sbjct 16036232 CTCGAGGGCGTTGAAGAGAAATTC--CCTTTCTTTGGAATCTTTAACATAAGTGTCAATG 16036175
Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971
| | ||| ||||| || ||||| || |||||||| || ||| | || |||||||||||
Sbjct 16036174 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAG 16036115
Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATA 12031
|| || |||| | ||| || || ||| | ||| | || || |||||||| ||
Sbjct 16036114 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 16036055
Query 12032 CCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAG-- 12089
|||||||| | ||||| || || || | || || ||||||| | || || ||
Sbjct 16036054 CCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTC---AGGC 16035998
Query 12090 TTAATTTATCCCAATCAT-CTAAA--TCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146
|| | || || | | || || || || || | ||| || |||||| | |||||||
Sbjct 16035997 TTCAGGGATTCC--TGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAA 16035940
Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206
| ||| | | || | |||||| | ||| |||||||| ||| | |||||| || |
Sbjct 16035939 AGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTACCCGACAGGGAAGATGA 16035880
Query 12207 CGAA 12210
| ||
Sbjct 16035879 CAAA 16035876
>seq7786
Length=83011774
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||||||||| | |||| ||| |
Sbjct 48121150 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 48121209
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| |
Sbjct 48121210 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 48121269
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 48121270 CCACCACTCTTTCCCC 48121285
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || ||
Sbjct 48125851 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 48125910
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|||||||| ||||||||||| || ||||||| | |||||| |||
Sbjct 48125911 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 48125956
>seq7842
Length=42459490
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| ||||| || | || ||||||| || ||||| ||
Sbjct 7548463 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 7548404
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| ||
Sbjct 7548403 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 7548344
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 7548343 ACAACCCGTTCTCC 7548330
>seq7870
Length=10551609
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| ||||| |||||||||
Sbjct 10335168 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 10335109
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || ||||||||||| || || || || |
Sbjct 10335108 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 10335049
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 10335048 CTGTTTCTTATACCAT 10335033
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| |||||||||||||| ||||| | || |||| | | | || | ||
Sbjct 10337845 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 10337786
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| ||||| |||||||| || || |||||||| || |||||||| | | || ||
Sbjct 10337785 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 10337726
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
| || || || ||||| || || ||||| | ||| ||
Sbjct 10337725 TCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTT 10337689
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | || ||||| ||||| | ||||| || || || | | ||
Sbjct 10316807 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 10316748
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| || || |||| ||||| | ||||||| || | ||| |||||||| | |
Sbjct 10316747 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 10316688
Query 38533 ATATGTTGTGGTCTTTCT 38550
||||||||||||||||||
Sbjct 10316687 ATATGTTGTGGTCTTTCT 10316670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468478697159680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |