Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7767 262 4e-65 seq7786 120 3e-22 seq7842 111 1e-19 seq7870 102 8e-17 >seq7767 Length=50048226 Score = 262 bits (290), Expect = 4e-65 Identities = 609/904 (67%), Gaps = 28/904 (3%) Strand=Plus/Minus Query 11320 ATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTT 11379 ||||| | ||| |||||| | ||||| |||| |||| || ||| ||| | ||| || Sbjct 16036764 ATTTGACATCACTCCCATCCTCTGATACTCACCTACTC-TC-TTCTCAAAGA--AGT-TT 16036710 Query 11380 ACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTC 11439 ||||| ||||| |||| |||||| ||| ||| ||||| | ||| |||| || || | Sbjct 16036709 CCCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCC 16036650 Query 11440 ACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACA 11499 | |||||| ||| | | || | ||| || || || ||| |||| |||||| Sbjct 16036649 AAAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGT 16036590 Query 11500 ACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATT 11559 |||||||| || || || | || || | | | || | ||| ||| ||||| Sbjct 16036589 GCAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCG 16036530 Query 11560 AACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTT 11619 ||| |||| ||| ||||| | | | | ||| || ||| || | | ||||| Sbjct 16036529 AACGGCATTAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGTTT 16036470 Query 11620 AAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGA 11679 ||||| | || ||||| ||||| |||||||| || ||||| || || |||||||| || Sbjct 16036469 GAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGA 16036410 Query 11680 AAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACC 11739 ||| | || ||||||| | ||||| || | ||| ||||| | ||||| ||||| Sbjct 16036409 AAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACC 16036350 Query 11740 AGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA----C 11793 ||||||||| ||||| |||||||| ||||| | || || | ||| || || || | Sbjct 16036349 AGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTC 16036290 Query 11794 CTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853 |||| | || |||| | |||||| || || ||||| ||||| || |||||| Sbjct 16036289 TTTGTCCCCAG---TCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGT 16036233 Query 11854 TTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATT 11911 || | ||||| | | |||| | ||||| | |||| | ||||| || || || Sbjct 16036232 CTCGAGGGCGTTGAAGAGAAATTC--CCTTTCTTTGGAATCTTTAACATAAGTGTCAATG 16036175 Query 11912 AATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACAT 11971 | | ||| ||||| || ||||| || |||||||| || ||| | || ||||||||||| Sbjct 16036174 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAG 16036115 Query 11972 CGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATA 12031 || || |||| | ||| || || ||| | ||| | || || |||||||| || Sbjct 16036114 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 16036055 Query 12032 CCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAG-- 12089 |||||||| | ||||| || || || | || || ||||||| | || || || Sbjct 16036054 CCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTC---AGGC 16035998 Query 12090 TTAATTTATCCCAATCAT-CTAAA--TCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 || | || || | | || || || || || | ||| || |||||| | ||||||| Sbjct 16035997 TTCAGGGATTCC--TGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAA 16035940 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 | ||| | | || | |||||| | ||| |||||||| ||| | |||||| || | Sbjct 16035939 AGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTACCCGACAGGGAAGATGA 16035880 Query 12207 CGAA 12210 | || Sbjct 16035879 CAAA 16035876 >seq7786 Length=83011774 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||||||||| | |||| ||| | Sbjct 48121150 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 48121209 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 48121210 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 48121269 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 48121270 CCACCACTCTTTCCCC 48121285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 48125851 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 48125910 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 48125911 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 48125956 >seq7842 Length=42459490 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 7548463 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 7548404 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| || Sbjct 7548403 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 7548344 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 7548343 ACAACCCGTTCTCC 7548330 >seq7870 Length=10551609 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||||||| Sbjct 10335168 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 10335109 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 10335108 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 10335049 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 10335048 CTGTTTCTTATACCAT 10335033 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| |||||||||||||| ||||| | || |||| | | | || | || Sbjct 10337845 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 10337786 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| ||||| |||||||| || || |||||||| || |||||||| | | || || Sbjct 10337785 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 10337726 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | || || || ||||| || || ||||| | ||| || Sbjct 10337725 TCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTT 10337689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | || Sbjct 10316807 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 10316748 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | ||||||| || | ||| |||||||| | | Sbjct 10316747 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 10316688 Query 38533 ATATGTTGTGGTCTTTCT 38550 |||||||||||||||||| Sbjct 10316687 ATATGTTGTGGTCTTTCT 10316670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468478697159680