Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7767 315 9e-81 seq7820 232 9e-56 seq7735 167 3e-36 seq7870 131 2e-25 seq7842 123 3e-23 seq7786 107 3e-18 >seq7767 Length=50048226 Score = 315 bits (348), Expect = 9e-81 Identities = 419/579 (72%), Gaps = 5/579 (1%) Strand=Plus/Minus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| ||||||| || || || || ||||||| |||||| ||||| ||||| | ||| Sbjct 16036474 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 16036415 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 ||||||||| || | || ||||| ||| |||| || || ||||| ||||| | |||||| Sbjct 16036414 TTGGAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAA 16036355 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319 || ||||||||||| |||||||| || || |||||| | | || | || || || | Sbjct 16036354 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 16036295 Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 | | |||| |||| | ||||| || |||||||| ||||||||||||||| Sbjct 16036294 GCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATT 16036235 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||||| | || || |||||| | | |||| || |||||||||||| || ||||| Sbjct 16036234 GTCTCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATG 16036175 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | ||||| ||||| || ||||| |||||||| ||||| ||| | || || |||||||| Sbjct 16036174 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAG 16036115 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | || || |||||||| |||||| | ||| || || | || |||||||| ||||| Sbjct 16036114 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 16036055 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 || ||||| | ||||| || |||| || || || ||| ||| | || | || | Sbjct 16036054 CCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC 16035995 Query 36620 AGTTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678 || ||||| | | || || || || | |||||| ||||| |||||||||| || Sbjct 16035994 AG-GGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGA 16035936 Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 36717 ||||| || || | |||||| | ||| || ||||| || Sbjct 16035935 AGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTA 16035897 >seq7820 Length=31847680 Score = 232 bits (256), Expect = 9e-56 Identities = 419/607 (69%), Gaps = 12/607 (2%) Strand=Plus/Minus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||||| ||||||| || || || | | ||||| |||||| ||||| ||||| | || Sbjct 14843668 TGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCTCATCTCTGCTAATAAGCTCA 14843609 Query 36203 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 36261 ||||||||| | ||| || ||||| |||| | || || ||||| ||||| |||||| | Sbjct 14843608 TTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGA 14843549 Query 36262 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--- 36318 || ||| ||||| | |||||||| || |||||| | | | | || || || Sbjct 14843548 AGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGT 14843489 Query 36319 ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 36378 | | | |||| | ||| ||||| || |||||||| || |||||||||| Sbjct 14843488 AGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCCTTCTTCCTTCCACAAGGCAT 14843429 Query 36379 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 36438 |||||| || | || |||||| | | | | || || |||||||| ||| || ||| | Sbjct 14843428 TGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGT 14843369 Query 36439 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 36498 | |||||| |||| || ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 14843368 GAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 14843309 Query 36499 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 36558 | || || || |||| |||||| | | | || || | || |||||||| ||||| Sbjct 14843308 GCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCTCCACCAAGTTTTCATTTACTAT 14843249 Query 36559 TCCGTCACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTT 36612 || |||| || ||||| || ||| ||| || || |||||||| | | || | Sbjct 14843248 GCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTC 14843189 Query 36613 TGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCC 36671 || | || ||||| | ||| || || || || | || ||| ||||| |||||| Sbjct 14843188 AGGCTTCAG-CGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCC 14843130 Query 36672 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 36731 |||| || ||||| || || ||| | || | ||| | ||||| || | || || || | Sbjct 14843129 AAAAGGAAGCCTCAGCTTTCTTACATATCTGCCAAAGATCATGGTACTTCATAGGGAAGA 14843070 Query 36732 TAACAAA 36738 | ||||| Sbjct 14843069 TGACAAA 14843063 >seq7735 Length=17007418 Score = 167 bits (184), Expect = 3e-36 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| || ||||| |||| ||| || ||||||| ||||||| Sbjct 11874669 TTTTTATTAACTGCTTCCAAAAAGTGCAACAGGTGCAGGAATAGGTTGATGACATCCAAG 11874610 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || |||||||| || | |||||| Sbjct 11874609 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCTTATGCATCAATGAGTGT 11874550 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | ||||| || | ||||| || || || |||| Sbjct 11874549 GTGTCATAGATGATGAATCCACAGAAAAGCAGGGCTCCCACAGCAGCCAAGATCAACTCC 11874490 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||||| ||| | | ||||| Sbjct 11874489 ATTGTTTGACTATAGAAAAATA 11874468 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| |||||||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 11867524 CCTGCTCCAAATTTACTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 11867465 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||| | || | || |||||||||||||||||| Sbjct 11867464 AATACAGCAGTAGTCAGTATAAATGCTTGGAGAATAATATACACATCATAGAAAGTAAC 11867406 Score = 104 bits (114), Expect = 3e-17 Identities = 90/108 (83%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||| ||| |||||||||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 11844935 CCAGTCGGATGTGCACACTGGCGGAGGCCACGCAGCTGCCATAGTTGAAATCGTCCTCGA 11844876 Query 9907 TGGAGGAGCACGCGTAGAGG--CTCGGCAT-GGCCATGGCGGC-GCAG 9950 |||||||||| | |||| || |||| | ||||||| |||| |||| Sbjct 11844875 TGGAGGAGCAGGGGTAGCGGGAGTCGGGGTCGGCCATGTCGGCAGCAG 11844828 >seq7870 Length=10551609 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 10335168 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 10335109 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 10335108 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 10335049 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 10335048 CTGTTTCTTATACCATA 10335032 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 10337845 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 10337786 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 10337785 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 10337726 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | |||| ||||||||| | ||| ||||||| | |||| | || || |||| Sbjct 10337725 TCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 10337675 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 10330155 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 10330096 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 10330095 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 10330036 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || || || || || || | ||| | Sbjct 10330035 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 10329976 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 10329975 ATTTATTTGA 10329966 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 10325159 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 10325100 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 10325099 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 10325040 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 10325039 AGGCTCCAGGTAAATAGC 10325022 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/182 (72%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 66786 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 ||||||| |||| |||| || | ||| |||||||||||||| | || || ||||| Sbjct 10311672 TCCTCCAGACTCAC--CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 10311615 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 66902 || || || || | |||||||| || ||||| | || || | || || ||| | || Sbjct 10311614 ATCCTTGCTGCCAGGATGGCATAGTCAGGATGCTTAGTCGTCAAGGTCGCAGCTGTCTCA 10311555 Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 66962 || |||| ||| || | ||| || || || || ||| | |||| |||||||| || ||| Sbjct 10311554 GCAGCCAAAGTATCTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTC 10311495 Query 66963 AT 66964 || Sbjct 10311494 AT 10311493 >seq7842 Length=42459490 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||| | Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346 Query 36300 C 36300 | Sbjct 7548345 C 7548345 >seq7786 Length=83011774 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| ||||||||||||||||||||||| || || | || || Sbjct 48121152 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 48121211 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 48121212 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 48121270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658108035796480