Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7771 147 2e-30 seq7820 91.5 1e-13 >seq7771 Length=57971676 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 7629510 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 7629569 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||| ||||||||||| || Sbjct 7629570 GCACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCA 7629629 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | || || |||||||| |||||| Sbjct 7629630 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATC 7629673 >seq7820 Length=31847680 Score = 91.5 bits (100), Expect = 1e-13 Identities = 261/396 (66%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 2798 AAATTAATTGATGGAAAAAATACATCACAATCAAAACTCTCCATAATGCGCGTAATATAT 2857 |||| |||| | |||||||||| | || ||||| || |||||| | || | | || Sbjct 25920265 AAATCAATTTCTTGAAAAAATACGTTACTTTCAAATTCCTGCATAATCCTTGTCACAAAT 25920206 Query 2858 AGTTTTA-AGGGACACTTATAGTTAAGAACACTCTCATAAACAGATTTTCCTCCAATAAC 2916 ||| | | | || | | | ||| | | || || |||||| | ||||| | Sbjct 25920205 AGTCTAAGATGGCCTGGTTT-GTTCATGGCTTCCTTATGAACAGAACTGCCTCCCGCTAT 25920147 Query 2917 CCAGACCGTGTTTAATTGTTCTTTTAGTTTGTATTG-TCTATAGAAATTAAACGCATCGT 2975 ||| ||| ||| | || | | || || |||| || ||| || || || ||||| | Sbjct 25920146 CCAAACCATGTCCACTTTGTTTGCTAATTCTGATTGCTCAATA-AATTTTAATGCATCAT 25920088 Query 2976 CTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAA 3035 | || || | || ||||| | ||||| || || ||||| | |||||||| | || Sbjct 25920087 CCAGACTTTTGGCAAGAAAAGGAGCTCCTTGTGGAGGTTCCTTGAGGTCTCTGCTGAGAA 25920028 Query 3036 TAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTT 3095 | ||||||||||| | | ||| | ||||| || || || || |||||| | | Sbjct 25920027 CTAAATTAATTCTGTCCTTTAAAGGTTGATTCTTCTCGGGAATAGAGAACCATATCTTCC 25919968 Query 3096 TCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAA 3155 | |||||||| |||| ||||| || |||| | || || | || | |||||| | || | Sbjct 25919967 TACCCATAATCACCAAATTCTGTTTACCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGA 25919908 Query 3156 AATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 || |||| | ||| || || || ||||| |||| Sbjct 25919907 AAAACATGAATTCATTCCTGAGCGGGGGCCAGGGCA 25919872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427734959170560