Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7846 109 5e-19 seq7767 104 2e-17 seq7823 93.3 4e-14 seq7857 84.2 2e-11 >seq7846 Length=12828309 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || ||||| | || ||||| || || ||||| || || || |||| | Sbjct 9163018 AAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGC 9163077 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || |||||||| || ||| |||||| | ||||| ||||| || ||||| ||| Sbjct 9163078 CCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCT 9163137 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | ||||| ||||||||||||| | ||| Sbjct 9163138 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 9163197 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| |||||||| || || ||||| || ||||| Sbjct 9163198 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 9163235 >seq7767 Length=50048226 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || || |||| || | ||||| || || Sbjct 33066754 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAGTTG 33066812 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||||| ||||| || ||||| || || ||| | | Sbjct 33066813 CTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC-CTGAATCT 33066871 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || | Sbjct 33066872 TGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCTTCCCCG 33066931 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | ||||| ||||| || ||||| Sbjct 33066932 TAAGGGTTTTCACGAAAATCTGCAT 33066956 >seq7823 Length=12955506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 3355541 ACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCC 3355482 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| | || || | ||||| || || || ||||| ||||| Sbjct 3355481 ATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTT 3355422 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 3355421 ATCTTGGATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 3355362 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 3355361 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3355326 >seq7857 Length=43258702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139551 GCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGT 139610 ||| ||| | ||| | || |||||||| || ||||||||||| | |||| | Sbjct 31543686 GCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCAT 31543745 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| ||||| || || ||| | || || | ||||| || || || ||||| ||||| | Sbjct 31543746 CTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTAT 31543805 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || || | | ||| | |||| ||||||||||||| | || | | Sbjct 31543806 CTTGGATCTTGGCCTTCACATTTTCGATGATGTCACTGGGCTCCACCTCCAGGGGGATGG 31543865 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||| | || || ||||| || ||||| Sbjct 31543866 TCTTGCCGGTTAGGGTCTTCACGAAGATCTGCAT 31543899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496015187302400