Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7767 224 1e-53 seq7842 111 2e-19 seq7820 109 5e-19 >seq7767 Length=50048226 Score = 224 bits (248), Expect = 1e-53 Identities = 567/858 (66%), Gaps = 13/858 (2%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | ||||| |||| ||||| || ||||||||||| | Sbjct 16036763 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTT-----TC 16036709 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCA 13682 ||||||||||| ||||| ||||| || |||||||||||| | | || || || || Sbjct 16036708 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 16036649 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 ||||||| || | | | || | || | |||||||||| | || |||||| Sbjct 16036648 AAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGTG 16036589 Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 |||||||| || || || || | || | | | || | || | | ||||| Sbjct 16036588 CAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 16036529 Query 13803 ACAGCCTCTTTTATAATAATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGT 13859 || || | | ||||| ||| | | ||| || ||||| | || ||| Sbjct 16036528 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGT 16036472 Query 13860 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13919 || || || | || ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 16036471 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 16036412 Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979 ||||| | || ||||||| | ||||| || | ||| ||||| | ||||| || Sbjct 16036411 GAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 16036352 Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039 || |||||||| ||||| || || |||||||| | | | ||||| || | | || Sbjct 16036351 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 16036292 Query 14040 TTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 14099 | ||||| | |||| | ||||| || | || || || | | || |||||| Sbjct 16036291 TCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTC 16036232 Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159 || | || || || | | ||||| | ||||| | | | || || || ||||| || Sbjct 16036231 TCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGG 16036172 Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 | || ||||| ||||| || ||||||||||| || || | || ||||| || || | Sbjct 16036171 AGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGG 16036112 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 ||||| | || ||||| | ||| | || |||| |||||||| ||||| ||| Sbjct 16036111 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 16036052 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||||| | ||||| || |||| | || | ||||||| ||| ||| || || Sbjct 16036051 TCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGG 16035992 Query 14340 TTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398 || | | | || | ||||| |||||||| || || ||| |||||||||| ||| Sbjct 16035991 GATTCCTGGTGCTGA-ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGC 16035933 Query 14399 GACAGCTTTTTTATACAT 14416 ||||||| | |||||| Sbjct 16035932 CTCAGCTTTCTCATACAT 16035915 >seq7842 Length=42459490 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || || |||||||| | Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 7548345 CCACAACCCGTTCTCC 7548330 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 7549966 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7549908 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 7549907 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 7549848 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 7549847 CATAAAGTCAAATGGATTT 7549829 >seq7820 Length=31847680 Score = 109 bits (120), Expect = 5e-19 Identities = 524/827 (63%), Gaps = 17/827 (2%) Strand=Plus/Minus Query 13597 CTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATG 13656 |||| || |||||||||||||| || ||||||||||| ||||| ||| ||| ||||||| Sbjct 14843928 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCCTAAGGTCAAATG 14843869 Query 13657 GATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAA 13716 ||||| | | | || || | |||||||||| | | || || || || | Sbjct 14843868 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTACCTAAGTCAGTCTGCCATGA 14843809 Query 13717 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 13776 | |||||||| || | ||| || ||||| || || || || | || | | Sbjct 14843808 ATTCAATATACTGCTTTACTAACGTGCAGTTCATCCCAATGAGCTTCGCGGGCAAGGCCT 14843749 Query 13777 TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAA---TCT 13833 | | || || | ||||| || || | | ||||| ||| | | ||| Sbjct 14843748 CTGGGAGGAACTCCTGGTCTATCCTAACGGCAT---TGATAATTATTTCCTTCACTCTCT 14843692 Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 | ||||| || || ||||| || || | || ||||| | || | | Sbjct 14843691 GCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAAC 14843632 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGtttt 13952 |||||||||| |||||||| || || ||||| | | || ||||||| | | ||| Sbjct 14843631 CCTCATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTC 14843572 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || | ||| ||||| | ||| | || || ||||| | ||||| || |||||||| Sbjct 14843571 TTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAG 14843512 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072 | | | ||| || | | || | ||||| | | ||| ||||| || Sbjct 14843511 TCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCT 14843452 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTA 14132 | || || | | || |||||| || || | || || | | |||| ||||||| Sbjct 14843451 GCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTG 14843392 Query 14133 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192 | | | ||| || || ||| | || | ||| |||| ||||| || ||||||||||| Sbjct 14843391 GAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATG 14843332 Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTT 14252 || || || || ||||| || || | ||||| | | | ||||| | | | | Sbjct 14843331 GCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGC 14843272 Query 14253 TCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AAT----ATG 14306 || |||| |||||||| ||||| ||| |||| || ||||| || ||| ||| | | Sbjct 14843271 TCCACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACG 14843212 Query 14307 TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA--TCCTTAG 14364 | ||||| | | ||| ||| || || || ||| | | | || ||||| | Sbjct 14843211 TGGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGG 14843154 Query 14365 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 |||||| || || ||| |||||||||| ||| ||||||| ||| Sbjct 14843153 AAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 14843107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479680794764800