Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq7767 224 1e-53
seq7842 111 2e-19
seq7820 109 5e-19
>seq7767
Length=50048226
Score = 224 bits (248), Expect = 1e-53
Identities = 567/858 (66%), Gaps = 13/858 (2%)
Strand=Plus/Minus
Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622
|| || || || ||||| | ||||| |||| ||||| || ||||||||||| |
Sbjct 16036763 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTT-----TC 16036709
Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCA 13682
||||||||||| ||||| ||||| || |||||||||||| | | || || || ||
Sbjct 16036708 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 16036649
Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742
||||||| || | | | || | || | |||||||||| | || ||||||
Sbjct 16036648 AAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGTG 16036589
Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802
|||||||| || || || || | || | | | || | || | | |||||
Sbjct 16036588 CAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 16036529
Query 13803 ACAGCCTCTTTTATAATAATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGT 13859
|| || | | ||||| ||| | | ||| || ||||| | || |||
Sbjct 16036528 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGT 16036472
Query 13860 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13919
|| || || | || ||||| ||||| || | ||||||||||| ||||||||||| ||
Sbjct 16036471 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 16036412
Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979
||||| | || ||||||| | ||||| || | ||| ||||| | ||||| ||
Sbjct 16036411 GAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 16036352
Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039
|| |||||||| ||||| || || |||||||| | | | ||||| || | | ||
Sbjct 16036351 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 16036292
Query 14040 TTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 14099
| ||||| | |||| | ||||| || | || || || | | || ||||||
Sbjct 16036291 TCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTC 16036232
Query 14100 TCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 14159
|| | || || || | | ||||| | ||||| | | | || || || ||||| ||
Sbjct 16036231 TCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGG 16036172
Query 14160 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219
| || ||||| ||||| || ||||||||||| || || | || ||||| || || |
Sbjct 16036171 AGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGG 16036112
Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279
||||| | || ||||| | ||| | || |||| |||||||| ||||| |||
Sbjct 16036111 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 16036052
Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339
||||| | ||||| || |||| | || | ||||||| ||| ||| || ||
Sbjct 16036051 TCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGG 16035992
Query 14340 TTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14398
|| | | | || | ||||| |||||||| || || ||| |||||||||| |||
Sbjct 16035991 GATTCCTGGTGCTGA-ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGC 16035933
Query 14399 GACAGCTTTTTTATACAT 14416
||||||| | ||||||
Sbjct 16035932 CTCAGCTTTCTCATACAT 16035915
>seq7842
Length=42459490
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| |
Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||||| ||||| || || |||||||| ||||| || || |||||||| |
Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346
Query 14014 CTATTAATCGTTCTCC 14029
| | | ||||||||
Sbjct 7548345 CCACAACCCGTTCTCC 7548330
Score = 100 bits (110), Expect = 3e-16
Identities = 107/139 (77%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 7549966 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7549908
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 7549907 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 7549848
Query 13643 CATAAAATCAAATGGATTT 13661
|||||| ||||||||||||
Sbjct 7549847 CATAAAGTCAAATGGATTT 7549829
>seq7820
Length=31847680
Score = 109 bits (120), Expect = 5e-19
Identities = 524/827 (63%), Gaps = 17/827 (2%)
Strand=Plus/Minus
Query 13597 CTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATG 13656
|||| || |||||||||||||| || ||||||||||| ||||| ||| ||| |||||||
Sbjct 14843928 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCCTAAGGTCAAATG 14843869
Query 13657 GATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAA 13716
||||| | | | || || | |||||||||| | | || || || || |
Sbjct 14843868 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTACCTAAGTCAGTCTGCCATGA 14843809
Query 13717 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 13776
| |||||||| || | ||| || ||||| || || || || | || | |
Sbjct 14843808 ATTCAATATACTGCTTTACTAACGTGCAGTTCATCCCAATGAGCTTCGCGGGCAAGGCCT 14843749
Query 13777 TGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAA---TCT 13833
| | || || | ||||| || || | | ||||| ||| | | |||
Sbjct 14843748 CTGGGAGGAACTCCTGGTCTATCCTAACGGCAT---TGATAATTATTTCCTTCACTCTCT 14843692
Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893
| ||||| || || ||||| || || | || ||||| | || | |
Sbjct 14843691 GCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAAC 14843632
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGtttt 13952
|||||||||| |||||||| || || ||||| | | || ||||||| | | |||
Sbjct 14843631 CCTCATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTC 14843572
Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012
|| | ||| ||||| | ||| | || || ||||| | ||||| || ||||||||
Sbjct 14843571 TTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAG 14843512
Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072
| | | ||| || | | || | ||||| | | ||| ||||| ||
Sbjct 14843511 TCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCT 14843452
Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTA 14132
| || || | | || |||||| || || | || || | | |||| |||||||
Sbjct 14843451 GCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTG 14843392
Query 14133 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192
| | | ||| || || ||| | || | ||| |||| ||||| || |||||||||||
Sbjct 14843391 GAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATG 14843332
Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTT 14252
|| || || || ||||| || || | ||||| | | | ||||| | | | |
Sbjct 14843331 GCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGC 14843272
Query 14253 TCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AAT----ATG 14306
|| |||| |||||||| ||||| ||| |||| || ||||| || ||| ||| | |
Sbjct 14843271 TCCACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACG 14843212
Query 14307 TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA--TCCTTAG 14364
| ||||| | | ||| ||| || || || ||| | | | || ||||| |
Sbjct 14843211 TGGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGG 14843154
Query 14365 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411
|||||| || || ||| |||||||||| ||| ||||||| |||
Sbjct 14843153 AAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 14843107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479680794764800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |