Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq7767 215 5e-51
seq7842 105 6e-18
seq7820 98.7 1e-15
seq7860 82.4 7e-11
>seq7767
Length=50048226
Score = 215 bits (238), Expect = 5e-51
Identities = 565/859 (66%), Gaps = 15/859 (2%)
Strand=Plus/Minus
Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410
|| || || || ||||| | ||||| |||| ||||| || ||||| ||||| |
Sbjct 16036763 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTT-----TC 16036709
Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCA 13470
||||||||||| ||||| ||||| || || ||||||||| | | || || || ||
Sbjct 16036708 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 16036649
Query 13471 CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13530
||||||| || | | | || | || | |||||||||| | || ||||||
Sbjct 16036648 AAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGTG 16036589
Query 13531 CAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590
|||||||| || || || || | || | | | || | || | | |||||
Sbjct 16036588 CAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 16036529
Query 13591 ACAGCCTCGTTTATAATAAT---CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGT 13647
|| || | | ||||| || ||| | | | || ||||| | || |||
Sbjct 16036528 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGT 16036472
Query 13648 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13707
|| || || | || ||||| ||||| || | ||||||||||| ||||||||||| ||
Sbjct 16036471 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 16036412
Query 13708 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 13767
||||| | || ||||||| | ||||| || | ||| ||||| | || || ||
Sbjct 16036411 GAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 16036352
Query 13768 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCT 13827
|| |||||||| ||||| || || |||||||| | | | ||||| || | | ||
Sbjct 16036351 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 16036292
Query 13828 TTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 13887
| ||||| |||| | ||||| || | || || || | | || ||||||
Sbjct 16036291 TCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTC 16036232
Query 13888 TCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 13947
|||| || ||||| | | |||| | ||||| | | | || || || ||||| ||
Sbjct 16036231 TCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGG 16036172
Query 13948 AAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTA 14007
| || ||||| ||||| || |||||||| || || || | || ||||| ||||| |
Sbjct 16036171 AGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGG 16036112
Query 14008 GCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067
||||||| || || || | ||| | || ||||||||||||| || || |||
Sbjct 16036111 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 16036052
Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127
||||| | ||||| || |||| | || | ||||||| ||| ||| || ||
Sbjct 16036051 TCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGG 16035992
Query 14128 TTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185
|| | | ||| || ||||| |||||||| || || ||| |||||||||| ||
Sbjct 16035991 GATTCCTGGT--GCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAG 16035934
Query 14186 CGACAGCTTTTTTATACAT 14204
| ||||||| | ||||||
Sbjct 16035933 CCTCAGCTTTCTCATACAT 16035915
>seq7842
Length=42459490
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| |
Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||||| || || || || |||||||| ||||| || || |||||||| |
Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346
Query 13802 CTATTAGTCGTTCTCC 13817
| | | ||||||||
Sbjct 7548345 CCACAACCCGTTCTCC 7548330
Score = 91.5 bits (100), Expect = 1e-13
Identities = 105/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 7549966 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7549908
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 7549907 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 7549848
Query 13431 CATAAAATCGAATGGATTT 13449
|||||| || |||||||||
Sbjct 7549847 CATAAAGTCAAATGGATTT 7549829
>seq7820
Length=31847680
Score = 98.7 bits (108), Expect = 1e-15
Identities = 519/824 (63%), Gaps = 11/824 (1%)
Strand=Plus/Minus
Query 13385 CTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATG 13444
|||| || ||||| |||||||| || ||||||||||| ||||| ||| ||| || ||||
Sbjct 14843928 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCCTAAGGTCAAATG 14843869
Query 13445 GATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAA 13504
||||| | | | || || | |||||||||| | | || || || || |
Sbjct 14843868 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTACCTAAGTCAGTCTGCCATGA 14843809
Query 13505 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 13564
| |||||||| || | ||| || ||||| || || || || | || | |
Sbjct 14843808 ATTCAATATACTGCTTTACTAACGTGCAGTTCATCCCAATGAGCTTCGCGGGCAAGGCCT 14843749
Query 13565 TAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCAT 13624
| | || || | ||||| || || | | | || || ||| | | | |
Sbjct 14843748 CTGGGAGGAACTCCTGGTCTATCCTAACGGCATTGATAATTATTTCCTTCACTCTCTGCT 14843689
Query 13625 TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684
||||| || || ||||| || || | || ||||| | || | ||||
Sbjct 14843688 CTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCT 14843629
Query 13685 CATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGttttttt 13743
||||||| |||||||| || || ||||| | | || ||||||| | | ||| ||
Sbjct 14843628 CATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTG 14843569
Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803
| ||| ||||| | || | || || ||||| | ||||| || |||||||| |
Sbjct 14843568 AGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCC 14843509
Query 13804 ATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAt 13863
| | ||| || | | || | ||||| | ||| ||||| || |
Sbjct 14843508 ACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCC 14843449
Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTA 13923
|| || | | || |||||| ||||| | ||||| | | ||| ||||||| | |
Sbjct 14843448 TTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAA 14843389
Query 13924 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCT 13983
| ||| || || ||| | || | ||| |||| ||||| || |||||||| || ||
Sbjct 14843388 TCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCA 14843329
Query 13984 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT 14043
|| || || ||||| ||||| | ||||||| | | || || | | | | ||
Sbjct 14843328 ATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCTCC 14843269
Query 14044 GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AAT----ATGTTT 14097
||||||||||||| || || ||| |||| || ||||| || ||| ||| | ||
Sbjct 14843268 ACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACGTGG 14843209
Query 14098 TTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAA 14155
||||| | | ||| ||| || || || ||| | | | || ||||| ||||
Sbjct 14843208 GGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGGAAA 14843151
Query 14156 GATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14199
||| || || ||| |||||||||| ||| ||||||| |||
Sbjct 14843150 GATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 14843107
>seq7860
Length=13696022
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/227 (69%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 131353 AGAGTATAAACGAGATCCCAAAAAGATG-CATAATGGAACAATAGAGTACACAAGTATAG 131411
||| || ||| ||| ||||||| |||| || |||| | || || | ||| || ||
Sbjct 3634494 AGAATACAAAGAAGACCCCAAAA-GATGTCACGATGGCATTATTGAATTCACCAGCATCA 3634436
Query 131412 ATATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTA 131471
|| |||| || ||||| | ||||| || || || ||||||||||| | || ||||| |
Sbjct 3634435 ATGTGCACAATGGTGTCGCCCCGTCAAGACGTGGTGATTTGGAAATCCTTGGTTATTGCA 3634376
Query 131472 TAATAAAATGGTTAGGTGGTAAATTGCCATGGGAAGATGATTTAAAAAATTGTAAATATG 131531
| || | || | |||| | | || ||||| ||| |||| ||| | ||| ||||
Sbjct 3634375 TGATCCAGTGACTTAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGACCCTAACTATG 3634316
Query 131532 TAATGGAGTCAAAGATTAAATACATGAACGATATTGTAAATTTAATG 131578
| | || || || |||| ||||| | |||||| | |||| |||
Sbjct 3634315 TTAGAGATTCCAAAATTAGATACAGAGAAAATATTGCAGATTTCATG 3634269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478541706862080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |