Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7767 215 5e-51 seq7842 105 6e-18 seq7820 98.7 1e-15 seq7860 82.4 7e-11 >seq7767 Length=50048226 Score = 215 bits (238), Expect = 5e-51 Identities = 565/859 (66%), Gaps = 15/859 (2%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || || || ||||| | ||||| |||| ||||| || ||||| ||||| | Sbjct 16036763 TTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTT-----TC 16036709 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCA 13470 ||||||||||| ||||| ||||| || || ||||||||| | | || || || || Sbjct 16036708 CCTTCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCA 16036649 Query 13471 CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13530 ||||||| || | | | || | || | |||||||||| | || |||||| Sbjct 16036648 AAACCTAGCTCCAGCATAAGTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGTG 16036589 Query 13531 CAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590 |||||||| || || || || | || | | | || | || | | ||||| Sbjct 16036588 CAATTCATCCCAATGAGCTTCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGA 16036529 Query 13591 ACAGCCTCGTTTATAATAAT---CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGT 13647 || || | | ||||| || ||| | | | || ||||| | || ||| Sbjct 16036528 ACGGCAT---TAATAATTATTTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGGTGT 16036472 Query 13648 TTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT 13707 || || || | || ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 16036471 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTG 16036412 Query 13708 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 13767 ||||| | || ||||||| | ||||| || | ||| ||||| | || || || Sbjct 16036411 GAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAA 16036352 Query 13768 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCT 13827 || |||||||| ||||| || || |||||||| | | | ||||| || | | || Sbjct 16036351 CCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCC 16036292 Query 13828 TTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT 13887 | ||||| |||| | ||||| || | || || || | | || |||||| Sbjct 16036291 TCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTC 16036232 Query 13888 TCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGT 13947 |||| || ||||| | | |||| | ||||| | | | || || || ||||| || Sbjct 16036231 TCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGG 16036172 Query 13948 AAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTA 14007 | || ||||| ||||| || |||||||| || || || | || ||||| ||||| | Sbjct 16036171 AGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGG 16036112 Query 14008 GCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCA 14067 ||||||| || || || | ||| | || ||||||||||||| || || ||| Sbjct 16036111 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 16036052 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 ||||| | ||||| || |||| | || | ||||||| ||| ||| || || Sbjct 16036051 TCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGG 16035992 Query 14128 TTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 || | | ||| || ||||| |||||||| || || ||| |||||||||| || Sbjct 16035991 GATTCCTGGT--GCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAG 16035934 Query 14186 CGACAGCTTTTTTATACAT 14204 | ||||||| | |||||| Sbjct 16035933 CCTCAGCTTTCTCATACAT 16035915 >seq7842 Length=42459490 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || || |||||||| | Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 7548345 CCACAACCCGTTCTCC 7548330 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 7549966 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7549908 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 7549907 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 7549848 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 7549847 CATAAAGTCAAATGGATTT 7549829 >seq7820 Length=31847680 Score = 98.7 bits (108), Expect = 1e-15 Identities = 519/824 (63%), Gaps = 11/824 (1%) Strand=Plus/Minus Query 13385 CTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATG 13444 |||| || ||||| |||||||| || ||||||||||| ||||| ||| ||| || |||| Sbjct 14843928 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCCTAAGGTCAAATG 14843869 Query 13445 GATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAA 13504 ||||| | | | || || | |||||||||| | | || || || || | Sbjct 14843868 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTACCTAAGTCAGTCTGCCATGA 14843809 Query 13505 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 13564 | |||||||| || | ||| || ||||| || || || || | || | | Sbjct 14843808 ATTCAATATACTGCTTTACTAACGTGCAGTTCATCCCAATGAGCTTCGCGGGCAAGGCCT 14843749 Query 13565 TAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCAT 13624 | | || || | ||||| || || | | | || || ||| | | | | Sbjct 14843748 CTGGGAGGAACTCCTGGTCTATCCTAACGGCATTGATAATTATTTCCTTCACTCTCTGCT 14843689 Query 13625 TAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 ||||| || || ||||| || || | || ||||| | || | |||| Sbjct 14843688 CTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCT 14843629 Query 13685 CATCTCTACTAATAAGTTCGTTTGAAAAT-GTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||||| |||||||| || || ||||| | | || ||||||| | | ||| || Sbjct 14843628 CATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTG 14843569 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 | ||| ||||| | || | || || ||||| | ||||| || |||||||| | Sbjct 14843568 AGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCC 14843509 Query 13804 ATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAt 13863 | | ||| || | | || | ||||| | ||| ||||| || | Sbjct 14843508 ACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCC 14843449 Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTA 13923 || || | | || |||||| ||||| | ||||| | | ||| ||||||| | | Sbjct 14843448 TTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAA 14843389 Query 13924 CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCT 13983 | ||| || || ||| | || | ||| |||| ||||| || |||||||| || || Sbjct 14843388 TCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCA 14843329 Query 13984 ATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCT 14043 || || || ||||| ||||| | ||||||| | | || || | | | | || Sbjct 14843328 ATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCTCC 14843269 Query 14044 GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AAT----ATGTTT 14097 ||||||||||||| || || ||| |||| || ||||| || ||| ||| | || Sbjct 14843268 ACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACGTGG 14843209 Query 14098 TTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAA 14155 ||||| | | ||| ||| || || || ||| | | | || ||||| |||| Sbjct 14843208 GGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGT--GTTGAATGTCCTTGGAAA 14843151 Query 14156 GATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14199 ||| || || ||| |||||||||| ||| ||||||| ||| Sbjct 14843150 GATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 14843107 >seq7860 Length=13696022 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 131353 AGAGTATAAACGAGATCCCAAAAAGATG-CATAATGGAACAATAGAGTACACAAGTATAG 131411 ||| || ||| ||| ||||||| |||| || |||| | || || | ||| || || Sbjct 3634494 AGAATACAAAGAAGACCCCAAAA-GATGTCACGATGGCATTATTGAATTCACCAGCATCA 3634436 Query 131412 ATATGCATAAAGGTGTATCTCCGTCTAGGCGAGGAGATTTGGAAATTTTAGGATATTGTA 131471 || |||| || ||||| | ||||| || || || ||||||||||| | || ||||| | Sbjct 3634435 ATGTGCACAATGGTGTCGCCCCGTCAAGACGTGGTGATTTGGAAATCCTTGGTTATTGCA 3634376 Query 131472 TAATAAAATGGTTAGGTGGTAAATTGCCATGGGAAGATGATTTAAAAAATTGTAAATATG 131531 | || | || | |||| | | || ||||| ||| |||| ||| | ||| |||| Sbjct 3634375 TGATCCAGTGACTTAGTGGCCATCTTCCTTGGGAGGATAATTTGAAAGACCCTAACTATG 3634316 Query 131532 TAATGGAGTCAAAGATTAAATACATGAACGATATTGTAAATTTAATG 131578 | | || || || |||| ||||| | |||||| | |||| ||| Sbjct 3634315 TTAGAGATTCCAAAATTAGATACAGAGAAAATATTGCAGATTTCATG 3634269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478541706862080