Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7820 87.8 3e-12 >seq7820 Length=31847680 Score = 87.8 bits (96), Expect = 3e-12 Identities = 555/876 (63%), Gaps = 40/876 (5%) Strand=Plus/Plus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| || | ||| ||||| ||||| | || | || || ||| |||| ||||||||| Sbjct 14843072 TTCCCTATGAAGTACCATGATCTTTGGCAGATATGTAAGAAAGCTGAGGCTTCCTTTTGG 14843131 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | |||||||| |||| ||||||||| | | | ||||| | | | |||| Sbjct 14843132 ACAGCTGAAGAGGTGAATCTTTCCAAGGACATTCAACACTGGGAATCGCTGAAGCCTGA- 14843190 Query 125118 ACTGAGCGAGAGTTTATATC------GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 ||| |||| |||||| | |||||| |||| |||||||| | | ||| Sbjct 14843191 --GGAGAGAGATTTTATACCCCACGTTCACATTCTGGCTTTCTTTGCGGCGAGTGTTGGC 14843248 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTC 125230 || || || || || || || || | |||| |||||| || |||| | | Sbjct 14843249 ATAGTAAATGAAAACTTGGTGGAGCGGTGTGGCCAAGAAGTTGA-GATGACAGAAGCCTG 14843307 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA--TGTACTCTACA 125288 || || || || |||||||| || || ||| | || || || | |||| ||| Sbjct 14843308 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAGATGTGTAGTCT--C 14843365 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACA--TGCTCTTTAACGCAATCG 125346 || | ||||| || ||| ||| | ||| | | ||| | | ||||| ||| | |||| Sbjct 14843366 CTCACTGACACTTATATTAAAGATTC-CAAAG-AGACAGAATTTCTCTTCAACACCATCG 14843423 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || |||| | | | | || ||||| | |||| | || ||| | | ||| | Sbjct 14843424 AGACAATGCCTTGTGGAAGGAAGAAGGCAGACTGGGCCTTGCGTTGGGTTGGGGACAAAG 14843483 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 || || | |||| || | |||| || || ||| || || |||| ||||| | Sbjct 14843484 AGGCTACCTACGGGGAATGGGATGTGGACTTTGCTGCCACGGAAGGAATCTCCTTTTTTG 14843543 Query 125467 GTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 || || |||| | || || ||||||||||| || | || ||||| || || ||| Sbjct 14843544 GTTCTTCTGCGTCGATATTCTGGCTCAAGAAATGCAGCCTGATGCCTGGCCT--CGCGGT 14843601 Query 125527 GT---AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | || ||| |||| |||| ||||| ||||| |||||||| || ||| Sbjct 14843602 TTTCCAATGAGCTTATTAGCAGAGATGAGGGTTTACACCACAACTTTGCCTGCCTGATGT 14843661 Query 125584 TTCGCAACTATCTGCGTCCCGA---GTGCAGATCCAGCGATGAAAAGGTCATCAACATTG 125640 | ||| | ||| |||| | | |||| ||| || | |||| | || Sbjct 14843662 T---CAAACACCTG-GTCCATAAACCTTCAGA-GCAGAGA-GTGAAGG------AAATAA 14843709 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700 | | | ||||||| |||||||| || ||||| || | || || | || | | | | Sbjct 14843710 TTATCAATGCCGTTAGGATAGACCAGGAGTTCCTCCCAGAGGCCTTGCCCGCGAAGCTCA 14843769 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 |||| |||||||||| | || | |||| || || || ||||||| | || || Sbjct 14843770 TTGGGATGAACTGCACGTTAGTAAAGCAGTATATTGAATTCATGGCAGACTGACTTAGGT 14843829 Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | || | | ||||| ||| || | | ||||| ||||| | | | | | Sbjct 14843830 AGGAACTAGGTTTTAGCAAGGTTTCCAGAGTAGAAAATCCATTTGACCTTAGGGAGAATA 14843889 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856 | ||||| || || ||||| ||||| || ||||||| Sbjct 14843890 TTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGA 14843925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740986279774720