Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7820 87.8 3e-12
>seq7820
Length=31847680
Score = 87.8 bits (96), Expect = 3e-12
Identities = 555/876 (63%), Gaps = 40/876 (5%)
Strand=Plus/Plus
Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057
||||| || | ||| ||||| ||||| | || | || || ||| |||| |||||||||
Sbjct 14843072 TTCCCTATGAAGTACCATGATCTTTGGCAGATATGTAAGAAAGCTGAGGCTTCCTTTTGG 14843131
Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117
|| | |||||||| |||| ||||||||| | | | ||||| | | | ||||
Sbjct 14843132 ACAGCTGAAGAGGTGAATCTTTCCAAGGACATTCAACACTGGGAATCGCTGAAGCCTGA- 14843190
Query 125118 ACTGAGCGAGAGTTTATATC------GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171
||| |||| |||||| | |||||| |||| |||||||| | | |||
Sbjct 14843191 --GGAGAGAGATTTTATACCCCACGTTCACATTCTGGCTTTCTTTGCGGCGAGTGTTGGC 14843248
Query 125172 ATCGTCAACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTC 125230
|| || || || || || || || | |||| |||||| || |||| | |
Sbjct 14843249 ATAGTAAATGAAAACTTGGTGGAGCGGTGTGGCCAAGAAGTTGA-GATGACAGAAGCCTG 14843307
Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA--TGTACTCTACA 125288
|| || || || |||||||| || || ||| | || || || | |||| |||
Sbjct 14843308 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTCTGAGATGTGTAGTCT--C 14843365
Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACA--TGCTCTTTAACGCAATCG 125346
|| | ||||| || ||| ||| | ||| | | ||| | | ||||| ||| | ||||
Sbjct 14843366 CTCACTGACACTTATATTAAAGATTC-CAAAG-AGACAGAATTTCTCTTCAACACCATCG 14843423
Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406
| || |||| | | | | || ||||| | |||| | || ||| | | ||| |
Sbjct 14843424 AGACAATGCCTTGTGGAAGGAAGAAGGCAGACTGGGCCTTGCGTTGGGTTGGGGACAAAG 14843483
Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466
|| || | |||| || | |||| || || ||| || || |||| ||||| |
Sbjct 14843484 AGGCTACCTACGGGGAATGGGATGTGGACTTTGCTGCCACGGAAGGAATCTCCTTTTTTG 14843543
Query 125467 GTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526
|| || |||| | || || ||||||||||| || | || ||||| || || |||
Sbjct 14843544 GTTCTTCTGCGTCGATATTCTGGCTCAAGAAATGCAGCCTGATGCCTGGCCT--CGCGGT 14843601
Query 125527 GT---AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583
| || ||| |||| |||| ||||| ||||| |||||||| || |||
Sbjct 14843602 TTTCCAATGAGCTTATTAGCAGAGATGAGGGTTTACACCACAACTTTGCCTGCCTGATGT 14843661
Query 125584 TTCGCAACTATCTGCGTCCCGA---GTGCAGATCCAGCGATGAAAAGGTCATCAACATTG 125640
| ||| | ||| |||| | | |||| ||| || | |||| | ||
Sbjct 14843662 T---CAAACACCTG-GTCCATAAACCTTCAGA-GCAGAGA-GTGAAGG------AAATAA 14843709
Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700
| | | ||||||| |||||||| || ||||| || | || || | || | | | |
Sbjct 14843710 TTATCAATGCCGTTAGGATAGACCAGGAGTTCCTCCCAGAGGCCTTGCCCGCGAAGCTCA 14843769
Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760
|||| |||||||||| | || | |||| || || || ||||||| | || ||
Sbjct 14843770 TTGGGATGAACTGCACGTTAGTAAAGCAGTATATTGAATTCATGGCAGACTGACTTAGGT 14843829
Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820
| || | | ||||| ||| || | | ||||| ||||| | | | | |
Sbjct 14843830 AGGAACTAGGTTTTAGCAAGGTTTCCAGAGTAGAAAATCCATTTGACCTTAGGGAGAATA 14843889
Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGA 125856
| ||||| || || ||||| ||||| || |||||||
Sbjct 14843890 TTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGA 14843925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740986279774720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |