Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq7786 102 7e-17
>seq7786
Length=83011774
Score = 102 bits (112), Expect = 7e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || ||||| || |||| ||| |
Sbjct 48121150 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 48121209
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || ||||| || || || ||||| || || ||||| |
Sbjct 48121210 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 48121269
Query 13293 CTATCAACCTTTCACC 13308
| | || ||||| ||
Sbjct 48121270 CCACCACTCTTTCCCC 48121285
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
||||||||||| |||||||| || ||||||||||| ||| |||| |||||||| || |
Sbjct 48114647 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAATTCATTCCAATGAGG 48114706
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065
|| |||| ||||||||||||||
Sbjct 48114707 CCAACTGGCAAGGCTTCTGTTAAAAA 48114732
Score = 82.4 bits (90), Expect = 7e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
|||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| || ||
Sbjct 48108402 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTC 48108461
Query 12922 CATAAAATCGAAAGGATTTT 12941
||||||||| || |||||||
Sbjct 48108462 CATAAAATCAAAGGGATTTT 48108481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430941051548544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |