Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq7759 107 2e-18 >seq7759 Length=36627259 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||| ||| |||| ||||||||| Sbjct 5668618 GGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTCTACCTGGAGGAGGTGATG 5668559 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || |||| || ||||||| || || || ||||| ||||| |||||| Sbjct 5668558 CCCCAGGCTGAGAACCACGACCCAAACATCAAGGAACATGTGAACTCCCTGGGGGAAAAG 5668499 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| || || Sbjct 5668498 CTGAAGACCCTCAGGCTGAGGCTGCGGCGTTG 5668467 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 129092 GCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACAT 129151 ||| || || |||| || ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 5666300 GCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACAT 5666241 Query 129152 AGAATCATACATGAC 129166 |||| | |||||||| Sbjct 5666240 AGAAACCTACATGAC 5666226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447706341360640