Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq7857 98.7 8e-16
seq7828 98.7 8e-16
seq7767 86.0 5e-12
seq7846 84.2 2e-11
>seq7857
Length=43258702
Score = 98.7 bits (108), Expect = 8e-16
Identities = 163/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | |||||||| | |||||| ||| |||||||||| ||||||| ||||
Sbjct 24178182 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGA 24178123
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| | || || | || ||||| ||||| || | | || || | ||||||||| |
Sbjct 24178122 CAGAGTG-CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAG 24178064
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | |||||| ||| ||| || ||| | | ||| ||||| | | || |
Sbjct 24178063 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTGTATTGTATCCGAGGGTTCAG 24178004
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| || ||||| || || | ||||||||||| |||||||||||| ||
Sbjct 24178003 CCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTTG 24177951
>seq7828
Length=21597463
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571
|| ||||| | |||||| ||| |||||||||||||||||| |||| ||| | || |
Sbjct 14213372 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGGACGTCCA 14213431
Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631
|| ||||| ||||| || | | || | | ||||||||| || | | ||||||
Sbjct 14213432 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 14213491
Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691
| | ||| || ||| ||| |||| ||||| | | || ||||| || |||
Sbjct 14213492 TTCTGAATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATG 14213551
Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
|| || || || || |||||||| |||||||||||| ||
Sbjct 14213552 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 14213590
>seq7767
Length=50048226
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48516 ACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCT 48575
|||| | |||||| || |||||||||||||||||| |||| ||| || | || |
Sbjct 33066746 ACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTT 33066805
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
|||| ||||| || | | || | | ||||||||| || | | |||||| |||
Sbjct 33066806 CCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 33066865
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
||| || ||| | | |||| ||||| | | || ||||| || ||||| |
Sbjct 33066866 GAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCT 33066925
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
| || || || |||||||| |||||||||||| ||
Sbjct 33066926 TCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 33066960
>seq7846
Length=12828309
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| | ||| | | || || || || ||| |||||| || |||||||| || |
Sbjct 9163008 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGA 9163067
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| ||| ||||||||||||| || ||| | | || || | |||||| || ||
Sbjct 9163068 CAGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGG 9163127
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | || |||||| || ||| ||||| | | ||||| || | | ||||
Sbjct 9163128 GATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 9163187
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729
||| | || ||||| |||||||| | || ||||| || |||||||||||
Sbjct 9163188 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATCGT 9163238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421210785159872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |