Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7857 98.7 8e-16 seq7828 98.7 8e-16 seq7767 86.0 5e-12 seq7846 84.2 2e-11 >seq7857 Length=43258702 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | |||||||| | |||||| ||| |||||||||| ||||||| |||| Sbjct 24178182 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGA 24178123 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | || ||||| ||||| || | | || || | ||||||||| | Sbjct 24178122 CAGAGTG-CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAG 24178064 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| ||| || ||| | | ||| ||||| | | || | Sbjct 24178063 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTGTATTGTATCCGAGGGTTCAG 24178004 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| || || | ||||||||||| |||||||||||| || Sbjct 24178003 CCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTTG 24177951 >seq7828 Length=21597463 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571 || ||||| | |||||| ||| |||||||||||||||||| |||| ||| | || | Sbjct 14213372 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGGACGTCCA 14213431 Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631 || ||||| ||||| || | | || | | ||||||||| || | | |||||| Sbjct 14213432 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 14213491 Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 | | ||| || ||| ||| |||| ||||| | | || ||||| || ||| Sbjct 14213492 TTCTGAATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATG 14213551 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || || |||||||| |||||||||||| || Sbjct 14213552 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 14213590 >seq7767 Length=50048226 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48516 ACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCT 48575 |||| | |||||| || |||||||||||||||||| |||| ||| || | || | Sbjct 33066746 ACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTT 33066805 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||| ||||| || | | || | | ||||||||| || | | |||||| ||| Sbjct 33066806 CCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 33066865 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||| ||||| | | || ||||| || ||||| | Sbjct 33066866 GAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCT 33066925 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || || || |||||||| |||||||||||| || Sbjct 33066926 TCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 33066960 >seq7846 Length=12828309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| | | || || || || ||| |||||| || |||||||| || | Sbjct 9163008 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGA 9163067 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| ||||||||||||| || ||| | | || || | |||||| || || Sbjct 9163068 CAGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGG 9163127 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || |||||| || ||| ||||| | | ||||| || | | |||| Sbjct 9163128 GATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 9163187 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||| | || ||||| |||||||| | || ||||| || ||||||||||| Sbjct 9163188 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATCGT 9163238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421210785159872