Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq7759 159 5e-34 seq7806 131 2e-25 >seq7759 Length=36627259 Score = 159 bits (176), Expect = 5e-34 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| | ||||| || || | || ||| ||| |||||||| || |||| || Sbjct 19738515 ATGAGTCTGCTCGTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGC 19738574 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || |||||||||||||||| ||||| || || ||||||||||| ||||||||| Sbjct 19738575 ACATCACAGACTCTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGC 19738634 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| || || | || || || ||||| | || | | ||| || | | ||| || Sbjct 19738635 ACCAGCCCGAAGACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAATATGGGGTGGG 19738694 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||||| ||||||||| | ||| ||||||| || || ||||| | | Sbjct 19738695 TAGATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACC 19738754 Query 9862 TGA 9864 ||| Sbjct 19738755 TGA 19738757 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 19739569 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 19739628 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 19739629 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 19739688 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 19739689 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCGGGAAGCTC 19739748 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| || ||||| Sbjct 19739749 TTTCTTGCCTGAAAAATGAGAA 19739770 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || |||||||| || | || || || || ||| || | Sbjct 19740180 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 19740239 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| || | |||||| | ||||| | Sbjct 19740240 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 19740299 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| || || ||||| Sbjct 19740300 GGTGGACTCTCAATCAAATGTGACCTGGCTGAA 19740332 >seq7806 Length=37070314 Score = 131 bits (144), Expect = 2e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || ||||| ||||| || |||||||| | || | Sbjct 10371793 TCTTGACCATATTGAAACCCATCTCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAG 10371852 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | |||||| ||||||||||| |||||||| | || | || | Sbjct 10371853 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 10371912 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||| ||| || ||| |||| | | || | ||| ||||||| Sbjct 10371913 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGTAGAACTCCA 10371972 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||| ||| || || || | ||||| ||||| ||||| || |||| Sbjct 10371973 AGGCATCGATGTGTCCATACAGCTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCTG 10372029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708455081159680