Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7870 96.9 9e-15 seq7767 96.9 9e-15 seq7842 91.5 4e-13 >seq7870 Length=10551609 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 10326532 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 10326591 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 10326592 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 10326651 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 10326652 AGCAACCTGTGCACAGAAATAGTAGAGTATACC 10326684 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || |||||||||||||| || | Sbjct 10325013 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTTCTGGATTTA 10325072 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || ||| |||||| | || || |||| ||| |||||| || Sbjct 10325073 AAGAAGAACACAGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCCCTTTGGATT 10325132 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 10325133 CCAGATCTCTTCATGAAACGAGTGGAG 10325159 >seq7767 Length=50048226 Score = 96.9 bits (106), Expect = 9e-15 Identities = 139/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||| ||||| || | |||| | |||| || | | | || |||| Sbjct 16036248 AAGAAGAAGGCAGACTGGGCCTTGCATTGGACTGGGGACAAAGAGGCTACCTACGGGGAA 16036307 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 || || | | ||||||| || ||||| || ||||||||||| | ||||| | | || Sbjct 16036308 CGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGACGAT 16036366 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 || ||||| || ||||||| | ||||| || | | |||||| ||||| | ||||| Sbjct 16036367 ATTCTGGCTCAAGAAACGTGACCTGATGCCTGGCCCCATGTTTTCCAATGAACTTATTAG 16036426 Query 22611 CCGAGATGAGGGT 22623 | ||||||||||| Sbjct 16036427 CAGAGATGAGGGT 16036439 >seq7842 Length=42459490 Score = 91.5 bits (100), Expect = 4e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 ||||| || | || ||||||| || ||||| || ||||||||||| | ||||| | | Sbjct 7548333 GAACGGGTTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGTC 7548391 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||| || ||||| || ||||| | | ||||| || || |||||||| ||||| | || Sbjct 7548392 AATATTCTGGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 7548451 Query 22608 TAGCCGAGATGAGG 22621 |||| ||||||||| Sbjct 7548452 TAGCAGAGATGAGG 7548465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303222143755904