Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7846 114 1e-20 seq9 93.3 3e-14 seq7857 87.8 1e-12 >seq7846 Length=12828309 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||| | || ||| |||| Sbjct 9163023 CAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTC 9163082 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| ||||| || ||| | || | || ||| ||||| || | |||||||||||| Sbjct 9163083 CTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCTTTGTC 9163142 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | ||| || | | | ||||| | ||||||| |||| ||||||||| Sbjct 9163143 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 9163202 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || || || |||||||| Sbjct 9163203 CTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 9163235 >seq9 Length=2205763 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| ||||| |||||||| || || || || ||||| | | Sbjct 1749325 CCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 1749384 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||||||| ||| || ||||| ||||| || Sbjct 1749385 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGG 1749444 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-- 16884 | |||||| ||||| || || ||| || || | | | ||||| | |||||| Sbjct 1749445 ATGCCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCAATGGTGTCACTGGGCTCGA 1749502 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 1749503 CACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1749553 >seq7857 Length=43258702 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||| || || | | || | | || Sbjct 31543687 CAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATC 31543746 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| |||| |||| ||| ||||| || | ||||||||| || Sbjct 31543747 TTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC 31543806 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | |||| | ||||||| |||| || |||| Sbjct 31543807 TTGGATCTTGGC--CTTCACATTTTCGATGATGTCACTGGGCTCCACCTCCAGGGGGATG 31543864 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || ||||| || || || || || |||||||||||| Sbjct 31543865 GTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTG 31543903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405049135857280