Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7865 118 7e-22 seq7828 111 1e-19 seq7767 102 5e-17 seq7857 91.5 1e-13 seq7818 87.8 1e-12 seq7765 86.0 4e-12 >seq7865 Length=68117122 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||||||| ||||| || |||||||| Sbjct 38332739 AAGCCCATTCCCTTGGCTGTGGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 38332798 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 38332799 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 38332833 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||| ||||||||||||||||||| || ||||||| ||||| || ||||| || Sbjct 8948176 AAACCCATTCCCTTGGCTGTGGTTTCACTGAATAGTAGGTAGGGATAGTGGGAATCTTGT 8948117 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| | | |||||||||||| || || Sbjct 8948116 TCATCCATTCATACACATCACTAATTAGACGATGA 8948082 >seq7828 Length=21597463 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 14213374 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGGACGTCCATC 14213433 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || | Sbjct 14213434 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 14213493 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||| || ||| | ||| | | ||||| |||||| || | || || || Sbjct 14213494 CTGAATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 14213553 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 14213554 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 14213589 >seq7767 Length=50048226 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 38107 ACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||| | ||||||||| |||||||||||| ||||| ||||||||| ||| | || | Sbjct 33066746 ACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTT 33066805 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | | ||| || || ||||| || || | || ||||| | || | ||||| || ||| Sbjct 33066806 CCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 33066865 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| || ||| ||||| | | ||||| ||||| || | || || || | Sbjct 33066866 GAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCT 33066925 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | ||||| | |||||||||||| |||||||| || Sbjct 33066926 TCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 33066959 >seq7857 Length=43258702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 ||||| | |||||||||| |||||||||| | ||||| ||||||| | ||| | || Sbjct 24178166 AACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAGAGTGCGTCCATCT 24178107 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || | ||| || || ||||| || | | || ||||| | || | ||||| || ||| Sbjct 24178106 TCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 24178047 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || ||| ||||| || | ||||| |||| | || | || || || Sbjct 24178046 TGAATCTTGGCCTTTACATTTTGTATTGTATCCGAGGGTTCAGCCTCGAGAGTGATGGTC 24177987 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | ||||||||||| |||||||| || Sbjct 24177986 TTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 24177952 >seq7818 Length=84771923 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| |||||| |||||| || Sbjct 26785801 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGATGGACAAAGTACGTTCATC 26785742 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | | ||| || || ||||| || || | || ||||| | || | |||| || || Sbjct 26785741 TCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACAAGGAATTTCTTCCTTATC 26785682 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||| || ||| |||| | ||| | |||||| || | || ||||| Sbjct 26785681 CTGAATCTTGACCTTTGCATTGTCTGTTGTAGCCGAGGGTTCAACCTCAAGAGTGATAGT 26785622 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | |||||||||||| |||||||| || Sbjct 26785621 CTTCCCGGTAAGGGTTTTCACGAAAATCTGCATTTT 26785586 >seq7765 Length=11866429 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||| |||||| | |||||||||| ||||| |||||| Sbjct 1511906 CTCTCTCTTCAAAGTTCTTTTCAAC-TTCCCTTATGGTACTTGTTGACTATCCGTCTCGT 1511964 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1511965 GCCGGTATTTAGCCTTA 1511981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334915065165632