Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7767 315 9e-81 seq7820 232 8e-56 seq7870 131 2e-25 seq7842 123 3e-23 seq7786 107 2e-18 >seq7767 Length=50048226 Score = 315 bits (348), Expect = 9e-81 Identities = 419/579 (72%), Gaps = 5/579 (1%) Strand=Plus/Minus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| ||||||| || || || || ||||||| |||||| ||||| ||||| | ||| Sbjct 16036474 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 16036415 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 ||||||||| || | || ||||| ||| |||| || || ||||| ||||| | |||||| Sbjct 16036414 TTGGAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAA 16036355 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 32822 || ||||||||||| |||||||| || || |||||| | | || | || || || | Sbjct 16036354 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 16036295 Query 32823 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 | | |||| |||| | ||||| || |||||||| ||||||||||||||| Sbjct 16036294 GCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATT 16036235 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||||| | || || |||||| | | |||| || |||||||||||| || ||||| Sbjct 16036234 GTCTCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATG 16036175 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | ||||| ||||| || ||||| |||||||| ||||| ||| | || || ||||| || Sbjct 16036174 AGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAG 16036115 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | || || |||||||| |||||| | ||| || || | || |||||||| ||||| Sbjct 16036114 CGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATG 16036055 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || ||||| | ||||| || |||| || || || ||| ||| | || || || | Sbjct 16036054 CCATCACTCGGCGCAAAGAAAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC 16035995 Query 33123 AGTTTATTCC-AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 || ||||| | | || || || || | |||||| ||||| |||||||||| || Sbjct 16035994 AG-GGATTCCTGGTGCTGAATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGA 16035936 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 33220 ||||| || || | |||||| | ||| || ||||| || Sbjct 16035935 AGCCTCAGCTTTCTCATACATCTGCCAAATATCATGGTA 16035897 >seq7820 Length=31847680 Score = 232 bits (256), Expect = 8e-56 Identities = 419/607 (69%), Gaps = 12/607 (2%) Strand=Plus/Minus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| ||||||| || || || | | ||||| |||||| ||||| ||||| | || Sbjct 14843668 TGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCTCATCTCTGCTAATAAGCTCA 14843609 Query 32706 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764 ||||||||| | ||| || ||||| |||| | || || ||||| ||||| |||||| | Sbjct 14843608 TTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGA 14843549 Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--- 32821 || ||| ||||| | |||||||| || |||||| | | | | || || || Sbjct 14843548 AGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGT 14843489 Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | | | |||| | ||| ||||| || |||||||| || |||||||||| Sbjct 14843488 AGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCCTTCTTCCTTCCACAAGGCAT 14843429 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 |||||| || | || |||||| | | | | || || |||||||| ||| || ||| | Sbjct 14843428 TGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGT 14843369 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 | |||||| |||| || ||||| |||||||| ||||| ||||| || || ||||| || Sbjct 14843368 GAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 14843309 Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061 | || || || |||| |||||| | | | || || | || |||||||| ||||| Sbjct 14843308 GCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCTCCACCAAGTTTTCATTTACTAT 14843249 Query 33062 TCCGTCACTGGCTGCAAAAAACGCC--AAT----ACATGTTTTATAAAATATTTTTCGTC 33115 || |||| || ||||| || ||| ||| || || |||||||| | | || || Sbjct 14843248 GCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTC 14843189 Query 33116 TGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCC 33174 || | || ||||| | ||| || || || || | || ||| ||||| |||||| Sbjct 14843188 AGGCTTCAG-CGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCC 14843130 Query 33175 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAA 33234 |||| || ||||| || || ||| | || | ||| | ||||| || | || || || | Sbjct 14843129 AAAAGGAAGCCTCAGCTTTCTTACATATCTGCCAAAGATCATGGTACTTCATAGGGAAGA 14843070 Query 33235 TAACAAA 33241 | ||||| Sbjct 14843069 TGACAAA 14843063 >seq7870 Length=10551609 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 10335168 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 10335109 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 10335108 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 10335049 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 10335048 CTGTTTCTTATACCATA 10335032 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 10337845 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 10337786 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| |||||| |||||||| ||||| || || || || || ||||| || | || || | Sbjct 10337785 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 10337726 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | |||| ||||||||| | ||| ||||||| | |||| | || || |||| Sbjct 10337725 TCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 10337675 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 10330155 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 10330096 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 10330095 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 10330036 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || || || || || || | ||| | Sbjct 10330035 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 10329976 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 10329975 ATTTATTTGA 10329966 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 10325159 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 10325100 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 10325099 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 10325040 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 10325039 AGGCTCCAGGTAAATAGC 10325022 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/182 (73%), Gaps = 5/182 (3%) Strand=Plus/Minus Query 63797 TCCTCCA---TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 ||||||| |||| |||| || | ||| |||||||||||||| | || || ||||| Sbjct 10311672 TCCTCCAGACTCAC--CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCA 10311615 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913 || || || || || |||||||| || ||||| | || || | || || ||| | || Sbjct 10311614 ATCCTTGCTGCCAGGATGGCATAGTCAGGATGCTTAGTCGTCAAGGTCGCAGCTGTCTCA 10311555 Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973 || |||| ||| || | ||| || || || || ||| | |||| |||||||| || ||| Sbjct 10311554 GCAGCCAAAGTATCTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTC 10311495 Query 63974 AT 63975 || Sbjct 10311494 AT 10311493 >seq7842 Length=42459490 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||| | Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346 Query 32803 C 32803 | Sbjct 7548345 C 7548345 >seq7786 Length=83011774 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| ||||||||||||||||||||||| || || | || || Sbjct 48121152 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 48121211 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || |||||||| |||||||| || ||||| || Sbjct 48121212 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGC 48121270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633569650611200