Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq7846 104 2e-17
seq7857 96.9 3e-15
>seq7846
Length=12828309
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || || || ||||| ||||||||||| ||||||| | || |||||| |
Sbjct 9163238 ACGATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 9163179
Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||| |||||| | ||| || ||| |||||||| || || || || |||
Sbjct 9163178 AGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAAGAGGGCATCCCCCCCGAC 9163119
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || |||||||| ||||| | || || | ||||| || || |||
Sbjct 9163118 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAGGACGGGCGCACCCTGTCAGACTAC 9163059
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || ||||| || || || || ||
Sbjct 9163058 AACATCCAGAAGGAGTCCACTCTGCACTTGGTCCT 9163024
>seq7857
Length=43258702
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| | || |||||| | |
Sbjct 31543671 ATGCAGATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 31543612
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| | ||||| || || || ||||||||
Sbjct 31543611 GACACCATTGAAAATGTGAAGGCGAATATCCAATATAAAGAGGGCATCCCCCCTGACCAG 31543552
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || |||| |||||| |||| || | ||||||| |||||| | |||||||||
Sbjct 31543551 CAGAGGCTTATCTTTGCCAGCAAGCAGATGGAAGATGGCCGCACTCTTTCTGATTACAAT 31543492
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || ||||| || || || ||
Sbjct 31543491 ATCCAGAAAGAGTCAACTCTCCA 31543469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433286426511680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |