Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7767 219 5e-52 seq7820 190 2e-43 seq7842 96.9 4e-15 >seq7767 Length=50048226 Score = 219 bits (242), Expect = 5e-52 Identities = 456/671 (68%), Gaps = 6/671 (1%) Strand=Plus/Minus Query 93038 ATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||| | ||||| || |||| ||||| || || | | ||| |||| | ||| || Sbjct 16036513 ATTTCCTTCACTCT-CTGCTTGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGC 16036455 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| |||||||| || |||| || || || | ||||| || | || | Sbjct 16036454 AAAGTCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACATGGGGCCAG 16036396 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | ||| | |||||||||||||| ||||| | |||||| ||||||||| || || | Sbjct 16036395 GCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTC 16036336 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| || ||||| |||||| ||||| | | | || || | ||| Sbjct 16036335 CTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCAGTCC 16036276 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | | || ||||| || || || ||||| | |||||| | ||| |||| ||||| || | Sbjct 16036275 AATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTCTCGAGGGCGTTGAAGA 16036216 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || | || | |||||| | || || || || | ||| ||||| |||| Sbjct 16036215 GAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGGAGACTGTACATCTCAG 16036156 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||||| || ||||| |||||| |||| || |||||||| | ||||| || ||||| | Sbjct 16036155 AATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 16036096 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||||| ||| | ||| || | |||||||| ||||| ||||| | ||||| | Sbjct 16036095 CTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCGCAAAGA 16036036 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574 |||||| | || || ||| | | |||| ||| || || ||| | | || Sbjct 16036035 AAGCCAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGA- 16035977 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || |||||||| || ||||| | |||||||| || || || ||||| | ||| Sbjct 16035976 ATGTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATAC 16035917 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694 || | ||| || || || || | || || |||||||| ||| |||||| ||| | Sbjct 16035916 ATCTGCCAAATATCATGGTACCCGACAGGGAAGATGACAAAGCGACGAGGGTTTTCTCTC 16035857 Query 93695 AGTAACGGCTC 93705 |||| ||||| Sbjct 16035856 AGTAGTGGCTC 16035846 >seq7820 Length=31847680 Score = 190 bits (210), Expect = 2e-43 Identities = 439/654 (67%), Gaps = 13/654 (2%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| || || | | ||| |||| | ||| ||||||| | |||||||| || ||| Sbjct 14843683 GGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTGTGGTGTAAACCCTCATCT 14843624 Query 93122 CGTGATATCAA-CTCATTGCTGAAT-GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 | || || || ||||||| || | | || || | ||| | | ||||||||||| Sbjct 14843623 C-TGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCTGCATTTCTTGAGCC 14843565 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||||| || ||| || |||| |||| | || |||||| ||| ||||| ||||| Sbjct 14843564 AGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAT 14843505 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTT 93299 | ||| | | | || || | | ||| || ||||| || || || | Sbjct 14843504 CCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGCCCAGTCTGCCTTCT 14843445 Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359 || | |||||| | ||| ||||| | ||| || || | ||| ||| | |||||| Sbjct 14843444 TCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTT 14843385 Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 || || || || | | ||| | |||| |||||||||| || ||||| ||||||| Sbjct 14843384 TAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTT 14843325 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479 |||| || |||||||| | ||||| || |||| |||||||| | | | ||| || | Sbjct 14843324 GGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCCACACCGCTCCACCA 14843265 Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG--CTT----TA 93533 |||||||| ||||| ||| | || ||||| ||||||| || || | | || Sbjct 14843264 AGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAATGTGAACGTGGGGTA 14843205 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 |||||| | |||| ||| || ||| ||||| | | || || ||||||| | Sbjct 14843204 TAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCA 14843145 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC--CCATATGTCTTG 93651 | ||||| | |||||||| || || || ||||| | |||||||| ||| | || || Sbjct 14843144 CCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCT--TACATATCTGCCAAAGATCATG 14843087 Query 93652 ATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || | || || || |||||||| ||| |||||| ||| | |||| ||||| Sbjct 14843086 GTACTTCATAGGGAAGATGACAAAGCGAAGAGGGTTTTCTGTCAGTAGGGGCTC 14843033 >seq7842 Length=42459490 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||| || |||||||||||||| |||||||| ||| Sbjct 7548445 TCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTGAGCCAGAATATTGACGCA 7548386 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| ||||||| ||||| Sbjct 7548385 AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTTC 7548333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556806004897280