Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 seq7828 98.7 8e-16 seq7767 95.1 1e-14 >seq9 Length=2205763 Score = 107 bits (118), Expect = 2e-18 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG--GAAAC 22274 ||||||| || ||||| || || | || || || || |||| ||||| ||| || | Sbjct 1749555 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGTCGAGCC 1749496 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || ||||| ||||| |||||||||||||| || || || || Sbjct 1749495 CAGTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGA 1749436 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| | ||||| ||||||||| | || ||| ||| || | || || || Sbjct 1749435 CCAGCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTA 1749376 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || ||||| |||||| | || || || Sbjct 1749375 TAATATCCAGAAAGAGTCCACCCTGCACTTGGT 1749343 >seq7828 Length=21597463 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || ||||||| || || ||| || Sbjct 14213589 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 14213530 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || |||| || || ||||| | ||||| || ||||| || ||| Sbjct 14213529 TCGGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 14213470 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| || | || ||| || | | || || ||| Sbjct 14213469 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTCCTTTGTCTGACTAC 14213410 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| || ||||| | ||| | || ||| || Sbjct 14213409 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 14213371 >seq7767 Length=50048226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| ||||||| || ||||| || || | | || || | ||| ||||||| || Sbjct 2430284 TGTAGAGATGCAGATCTTTGTGAAGACCCTGAG-GGCAAGATCATCATCCTTGAAGCTGA 2430226 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| || ||| || ||| ||||| ||||| |||||||||||||| || ||||| Sbjct 2430225 GCCCAATGACACCACTGAGGATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACC 2430166 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || | ||| || |||| |||||||| | |||||| | ||| |||| || Sbjct 2430165 TGACCAGCATCATCTGATTCTTGCGAGCAAACAGCTGGAGGATGGCTGCA--TTCTCAGA 2430108 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || ||||| |||| | | || || || Sbjct 2430107 CTACAAAATCCAGAAAGAGTCCATCCTGCACTTGGT 2430072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || ||||| | || || || || |||| || || || || || Sbjct 33066959 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGATCCC 33066900 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || ||||| || ||||| || ||||| || ||| Sbjct 33066899 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 33066840 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| || | || ||| ||||| | || || ||| Sbjct 33066839 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 33066780 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || || | ||| | || | | || | || || ||| Sbjct 33066779 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTGGAGACTTCGTGGTGGT 33066729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419687731295680