Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7767 147 4e-30 seq7786 87.8 3e-12 >seq7767 Length=50048226 Score = 147 bits (162), Expect = 4e-30 Identities = 366/550 (67%), Gaps = 17/550 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| || | ||| |||||||| ||||| ||| ||| |||| | Sbjct 16036029 CTGGCTTTCTTTGCGCCGAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGC 16036088 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| || ||| ||| || || ||||| ||||| ||||||| || ||||| || | Sbjct 16036089 CAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCGAATTGCCATGGAAA 16036146 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | || |||||| ||||| | || |||| |||| || | ||| || | Sbjct 16036147 ACATCCATTCTGAGATGTAC---AGTCTCCTCATTGACACTTATGTTAAAGATTCCAAAG 16036203 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | | | || ||||| ||| | ||||| ||||| || | ||||||||||| |||| Sbjct 16036204 AAAGGGAATTTCTCTTCAACGCCCTCGAGACAATGCCTTGTGTAAAGAAGAAGGCAGACT 16036263 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | | |||| | | || || || | ||| || || | || | |||| Sbjct 16036264 GGGCCTTGCATTGGACTGGGGACAAAGAGGCTACCTACGGGGAACGGGTTGTGGACTTTG 16036323 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || || |||||||| || || | || || | || |||||||||||| | Sbjct 16036324 CTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTGGCTCAAGAA-- 16036381 Query 42778 AGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | ||| | |||||| || | || || || || ||||| || ||||| || ||||| | Sbjct 16036382 ACGTGACCTGATGCCTGGCCCCATGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTT 16036441 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 || | |||||||||||||| ||||| | ||||| ||||| || || ||| | Sbjct 16036442 ACACTGTGACTTTGCCTGCCTGATGTTC---AAACACCTGGTCCACAAACCTTCCAAGCA 16036498 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 | | || || || || | | ||||| ||| ||| ||| |||||||||| || | Sbjct 16036499 GAGAGTGAAGGAAATAATTATTAATGCCGTTCGGATAGAGCAGGGGTTCCTCACGGAGAC 16036558 Query 42956 GCTGCCCGTG 42965 ||||| || Sbjct 16036559 CTTGCCCCTG 16036568 >seq7786 Length=83011774 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || || || || || ||||||||||| | || || | || |||| Sbjct 48121275 TGGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCTGCTATATTCT 48121216 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | |||| || |||||||||||||| || || || |||||||||||||| Sbjct 48121215 GGCTAAAGAAAAGAGGTCTC-ATGCCCGGACTCACGTTTTCCAATGAACTCATCAGCAGA 48121157 Query 42825 GACGA 42829 || || Sbjct 48121156 GATGA 48121152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944246277022720