Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7767 313 3e-80 seq7820 235 6e-57 seq7786 120 3e-22 seq7842 111 2e-19 seq7870 107 2e-18 >seq7767 Length=50048226 Score = 313 bits (346), Expect = 3e-80 Identities = 640/939 (68%), Gaps = 19/939 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTC-ATTAGAATTCATTACTCCCATTT 18670 ||| || ||| ||||||| | ||||||||||| || ||| || ||| |||||||| Sbjct 16036801 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGA---CATCACTCCCATCC 16036745 Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 | ||||| || | ||||| || |||||||| || | || || | ||| ||| | Sbjct 16036744 TCTGATACTCACCTACTCTCTTCTCAAAGAAGTT-----TCCCTTCCAGTGAAATATTCT 16036690 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| || ||||||||||||| ||| | | | || || |||| || | | | Sbjct 16036689 CCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAA 16036630 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 ||| | || ||||| | |||| | ||||| | |||||||| || || | | Sbjct 16036629 GTCGGTGTGCCACAAACTCAATACACTGCTTCATTAACGTGCAATTCATCCCAATGAGCT 16036570 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAG 18910 | | || | | || || || || | || ||||| || || | | ||| | || Sbjct 16036569 TCAGGGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCAT-TAATA-ATTAT 16036512 Query 18911 ATACAACTCTATCTTCATTAGGAGGGTA-TAGA--AGATGTTTAAACATCAAACATGCAA 18967 | | | || ||| | || | ||| | | || || ||||| ||||||| || |||| Sbjct 16036511 TTCCTTCACTCTCTGC-TTGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAA 16036453 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||| ||||| || || | |||||| ||||| | ||||||| Sbjct 16036452 AGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACATGGGGCCAGGCA 16036393 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 |||| | | ||| || | ||||||||| | ||||| || ||||||||||| || |||| Sbjct 16036392 TCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTT 16036333 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||| | || | | ||| || || |||| || || | | |||| | Sbjct 16036332 CCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCAGTCCAAT 16036273 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| || |||||||| |||||||| ||||||||||| | | || || ||| Sbjct 16036272 GCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGTCTCGAGGGCGTTGAAGAGAA 16036213 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | || | | |||||||||||| | || || | | ||||||||| || |||| Sbjct 16036212 ATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAGGAGACTGTACATCTCAGAAT 16036153 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || | || || || ||||| | |||||||| ||||| |||| Sbjct 16036152 GGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTT 16036093 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | ||| | || ||||| |||||||| ||||| |||||||| | ||||| || | Sbjct 16036092 CTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCGCAAAGAAAG 16036033 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGG-TTAATGTATTCC-AATCATTAAT 19445 | | || || ||| || || | || || ||| || | | ||||| | | ||| Sbjct 16036032 CCAGAAC--GTGGGATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAAT 16035975 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 || || || | ||| || |||||| |||||||||| |||||||| ||||| | |||||| Sbjct 16035974 GTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACAT 16035915 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | || | ||| || || ||||| Sbjct 16035914 CTGCCAAATATCATGGTACCCGACAGGGAAGATGACAAA 16035876 >seq7820 Length=31847680 Score = 235 bits (260), Expect = 6e-57 Identities = 630/947 (67%), Gaps = 21/947 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||| | ||||||||||| | || || || ||| ||||| || Sbjct 14844002 TTATAAGTCAGTATCCACGGTAAAAGAATTCTTTG--TTGGACTTGACATCACTCCTATC 14843945 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| | | | |||| || |||||||| ||||| || || || | ||| ||| Sbjct 14843944 CTCTGATACTGGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 14843885 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||| ||| ||||||||||||| ||| | | | || | || |||| ||| | Sbjct 14843884 TCCCTAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTCCTACCTA 14843825 Query 18790 AGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTAA 18848 |||| || || | |||| |||||| || || | | | || ||||| || || | Sbjct 14843824 AGTCAGTCTGCCATGAATTCAATATACTGCTTTACTAACGTG-CAGTTCATCCCAATGAG 14843766 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || | || | || |||| || || || || ||||| | || || | ||||| | | Sbjct 14843765 CTTCGCGGGCAAGGCCTCTGGGAGGAACTCCTGGTCTATCCTAACGGCAT-TGATA-ATT 14843708 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGT-ATAGA--AGATGTTTAAACATCAAACATGC 18965 | | | | || ||| | | | ||| | || || || ||||| ||||||| || || Sbjct 14843707 ATTTCCTTCACTCTCTGCTCT-GAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGC 14843649 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT-GTTAAACCAG 19024 ||| | |||| ||||| ||||| || || | ||||| ||||| | | |||| Sbjct 14843648 AAAGTTGTGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAG 14843589 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 ||||||| | | ||| || | ||||||||| || ||| | || ||| ||||| | || | Sbjct 14843588 GCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTC 14843529 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 |||| || ||||| | || | ||| || || |||| || || | || || Sbjct 14843528 CTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCC 14843469 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||||| || |||||||| || |||| ||||||||||| || | || || | Sbjct 14843468 AACGCAAGGCCCAGTCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGA 14843409 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 || | ||| | | |||||||| ||| | || | | | ||| |||| || | Sbjct 14843408 GAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAG 14843349 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| || ||||| || || || || || || || ||||| | |||||||| |||| | Sbjct 14843348 AATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAA 14843289 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | | | | || ||||| |||||||| ||||| ||| |||| || ||||| | Sbjct 14843288 CTTCTTGGCCACACCGCTCCACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGA 14843229 Query 19385 ATGC--TAAT----ACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAA 19437 | || ||| || || ||||||| | | || || | | || | ||| ||| Sbjct 14843228 AAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAG-GCTTCAGCGATTCCCAG 14843170 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | | ||| || || || | || || |||||| |||||||||| |||||||| ||||| Sbjct 14843169 TGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTC 14843110 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| | || | ||| | |||| | || | ||||| || || ||||| Sbjct 14843109 TTACATATCTGCCAAAGATCATGGTACTTCATAGGGAAGATGACAAA 14843063 >seq7786 Length=83011774 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || |||||||| ||| Sbjct 48121152 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 48121211 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || |||||||| Sbjct 48121212 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 48121271 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 48121272 ACCACTCTTTCCCC 48121285 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || ||||||| ||| ||||||||||| ||||| || ||||| || || || Sbjct 48108402 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCTC 48108461 Query 18732 CATAAAATCAAATGGATTTT 18751 |||||||||||| ||||||| Sbjct 48108462 CATAAAATCAAAGGGATTTT 48108481 >seq7842 Length=42459490 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | ||||||||||| || | ||| | Sbjct 7548465 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 7548406 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 7548405 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7548346 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 7548345 CCACAACCCGTTCTCC 7548330 Score = 109 bits (120), Expect = 6e-19 Identities = 113/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 7549967 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 7549910 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 7549909 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 7549850 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 7549849 TCCATAAAGTCAAATGGATTTTCTAC 7549824 >seq7870 Length=10551609 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || ||||| ||||| || || Sbjct 10335165 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 10335106 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 10335105 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 10335046 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 10335045 TTTCTTATACCATA 10335032 Score = 100 bits (110), Expect = 3e-16 Identities = 126/172 (73%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || |||||||||||||| || | ||| ||| |||| || | ||| || || | Sbjct 10337845 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 10337786 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | || ||| Sbjct 10337785 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCT---TAAGAACGG 10337729 Query 47170 TT---TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || |||| || ||||| || || ||||||| ||| || | ||| || || Sbjct 10337728 TTTTCTGTGAAATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 10337677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562053488494080