Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7767 188 8e-43 seq7820 113 5e-20 seq7786 111 2e-19 seq7842 93.3 5e-14 >seq7767 Length=50048226 Score = 188 bits (208), Expect = 8e-43 Identities = 312/448 (70%), Gaps = 2/448 (0%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| |||||||| || || | |||||| Sbjct 16036472 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 16036413 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| | || ||||| | | | ||| || | ||| ||||| | |||||||| Sbjct 16036412 GGAAAACATGGGGCCAGGCATCAGGTCACGTTTCTTGAGCCAGAATATCGTCGCAAAAGA 16036353 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| || || ||||| | |||| ||| ||| | || | Sbjct 16036352 ACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGC 16036293 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || | |||| | | ||| |||||||| || ||||| ||||| Sbjct 16036292 CTCTTTGTCCCCAGTCCAATGCAAGGCCCAGTCTGCCTTCTTCTTTACACAAGGCATTGT 16036233 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 || | || || |||||||| | |||||| |||| | | |||||| ||||| || Sbjct 16036232 CTCGAGGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAACATAAGTGTCAATGAG 16036173 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||| ||||| ||||| || || ||||| || || || | || ||||| ||||| | Sbjct 16036172 GAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAATTCGGAAGCCATAGAAACAGCG 16036113 Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||| | |||| ||||| || | ||||| || | ||||||||||| ||||| | Sbjct 16036112 GGCTTCTG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGC 16036054 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAAC 37609 ||||||| | ||||||||||| ||||| Sbjct 16036053 CATCACTCGGCGCAAAGAAAGCCAGAAC 16036026 >seq7820 Length=31847680 Score = 113 bits (124), Expect = 5e-20 Identities = 277/419 (66%), Gaps = 1/419 (0%) Strand=Plus/Minus Query 37191 TGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG-GTTAATCCTGGCATTAAACC 37249 |||||||| |||||||| || || | ||||| ||||| | | || ||||| | | Sbjct 14843638 TGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGCGAGGCCAGGCATCAGGCT 14843579 Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309 | ||| || | ||| ||||| | ||| |||| ||| ||||| | || ||||| || Sbjct 14843578 GCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGC 14843519 Query 37310 TGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGT 37369 ||||| | ||| | | ||| | || | | || || ||| | Sbjct 14843518 AGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACGCAAGGC 14843459 Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| |||||||| | |||| ||||| || || | || |||||||| | | | Sbjct 14843458 CCAGTCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGT 14843399 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 |||| |||| | |||||||| ||| | || | |||| |||| ||||| || || || Sbjct 14843398 CTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTT 14843339 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAA 37549 ||| || || || || || ||||| ||||| | ||||| | | | ||| || | Sbjct 14843338 TTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTCAACTTCTTGGCC 14843279 Query 37550 AAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 | ||| || | ||||||||||| ||||| ||| |||| || ||||||||||| |||| Sbjct 14843278 ACACCGCTCCACCAAGTTTTCATTTACTATGCCAACACTCGCCGCAAAGAAAGCCAGAA 14843220 >seq7786 Length=83011774 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 48121150 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 48121209 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 48121210 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 48121269 Query 37318 CTAC 37321 | || Sbjct 48121270 CCAC 48121273 >seq7842 Length=42459490 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | || | ||| || Sbjct 7548463 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 7548404 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| |||||||| ||||||||||| || ||||| || || ||||| || Sbjct 7548403 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 7548344 Query 37320 ACAA 37323 |||| Sbjct 7548343 ACAA 7548340 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 7549922 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 7549864 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 7549863 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 7549830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592258516026880