Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7767 91.5 1e-13 seq7828 86.0 5e-12 seq9 86.0 5e-12 seq7857 84.2 2e-11 >seq7767 Length=50048226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48556 ACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||| | ||| || || ||| |||||||| ||||| ||||| | | | || | || | Sbjct 33066746 ACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTT 33066805 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 ||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 33066806 CCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 33066865 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 |||||| |||||| | | | || || | || ||||| | || || || | Sbjct 33066866 GAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCT 33066925 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 | ||||| | ||||| || |||||||||||| || Sbjct 33066926 TCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 33066960 >seq7828 Length=21597463 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| | | || | || Sbjct 14213374 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGGACGTCCATC 14213433 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| | Sbjct 14213434 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATT 14213493 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| |||| | | | | || || | || ||||| | || || || Sbjct 14213494 CTGAATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGT 14213553 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | ||||| || |||||||||||| || Sbjct 14213554 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 14213590 >seq9 Length=2205763 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| ||| || | |||||| || || ||| |||||| || ||||| || || || Sbjct 1749324 GCCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGA 1749383 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| ||| || || ||||| | ||| ||||| || || | || Sbjct 1749384 CAGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGG 1749443 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC--C 48716 | |||||||||||| || || ||| ||| | | | || | ||| | Sbjct 1749444 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1749503 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| | || || || || ||||||| || || ||||| ||||||||| Sbjct 1749504 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATC 1749554 >seq7857 Length=43258702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 ||||| | ||| || ||| ||| |||||| | ||||| ||||| ||| | || | || Sbjct 24178166 AACACAAGATGAAGAGTGGACTCCTTTTGAGTGTTGTAGTCAGACAGAGTGCGTCCATCT 24178107 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 |||| ||||| || ||||| |||| || ||| ||||| | |||| || ||||| || Sbjct 24178106 TCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 24178047 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 |||||| |||||| | | || || | || |||| | || || || Sbjct 24178046 TGAATCTTGGCCTTTACATTTTGTATTGTATCCGAGGGTTCAGCCTCGAGAGTGATGGTC 24177987 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||| | | |||||| || |||||||||||| || Sbjct 24177986 TTCCCCATAAGAGTTTTCACGAAAATCTGCATCTTG 24177951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380901052846656