Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7767 113 8e-20 seq7828 107 3e-18 seq7857 102 1e-16 seq7764 86.0 1e-11 >seq7767 Length=50048226 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || ||| || ||||| || || || | ||| || Sbjct 33066748 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCC 33066807 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | |||||| ||||||||||| |||||||| ||||| || Sbjct 33066808 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 33066867 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 33066868 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCTTC 33066927 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || ||||| || Sbjct 33066928 CCCGTAAGGGTTTTCACGAAAATCTGCATCTT 33066959 >seq7828 Length=21597463 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || | | ||| || Sbjct 14213378 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGGACGTCCATCTTCC 14213437 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | |||||| ||||||||||| |||||||| |||| || Sbjct 14213438 AGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGA 14213497 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||||||||| || ||||| || | ||||| || ||||| || || || Sbjct 14213498 ATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATGGTCTTC 14213557 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || ||||| || Sbjct 14213558 CCCGTAAGGGTTTTCACGAAAATCTGCATCTT 14213589 >seq7857 Length=43258702 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || |||||||| ||||||||||| |||||||| || Sbjct 24178110 ATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTT 24178051 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || ||||| || | ||| | || ||||| || Sbjct 24178050 ATCCTGAATCTTGGCCTTTACATTTTGTATTGTATCCGAGGGTTCAGCCTCGAGAGTGAT 24177991 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || | || ||||| || || || ||||| || Sbjct 24177990 GGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 24177952 >seq7764 Length=47977530 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 193237 TCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAG 193296 |||| ||||||||||| |||||||| ||||| || || |||| |||| |||| | | Sbjct 26988300 TCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACTG 26988359 Query 193297 TATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356 || | || || ||||| || ||||| || || || || | || ||||| ||||| || | Sbjct 26988360 TACCTGAGGATTCAACCTCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCT 26988419 Query 193357 GCATTTT 193363 |||| || Sbjct 26988420 GCATCTT 26988426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899565874007040