Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7857 127 4e-24 seq7767 123 5e-23 seq7828 114 3e-20 seq7818 91.5 3e-13 >seq7857 Length=43258702 Score = 127 bits (140), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | ||| || | ||| | ||| | ||| ||| ||| | || || |||| Sbjct 24178182 ACCACCACGAAGTCTTAACACAAGATGAAGAGTGGACTCCTTTTGAG-TGTTGTAGTCAG 24178124 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || ||| |||| |||| ||| || ||||||||||| |||||||| |||||||| | Sbjct 24178123 ACAGAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCAGGAG 24178064 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| Sbjct 24178063 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTGTATTGTATCCGAGGGTTCAG 24178004 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || | | ||||| | || |||||||| || Sbjct 24178003 CCTCGAGAGTGATGGTCTTCCCCATAAGAGTTTTCACGAAAATCTGCATCTT 24177952 >seq7767 Length=50048226 Score = 123 bits (136), Expect = 5e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | | || | ||| | ||||| ||| ||| || || || || |||| Sbjct 33066729 ACCACCACGAAGTCTCCACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 33066787 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | |||||| |||||||| | Sbjct 33066788 ACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 33066847 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | || | Sbjct 33066848 GAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAA 33066907 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || |||||||| || Sbjct 33066908 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 33066959 >seq7828 Length=21597463 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||| | | ||| | || || | ||| | ||| | ||| ||| || || || || |||| Sbjct 14213359 ACCATCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 14213417 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | ||| |||| |||| ||| || ||||||||||| | |||||| |||||||| | Sbjct 14213418 ACAAAGGACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 14213477 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| |||| || || || |||| ||| ||| | ||| || | ||| | Sbjct 14213478 GAATTCCTTCCTTATTCTGAATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAA 14213537 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | ||||| | || |||||||| || Sbjct 14213538 CCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 14213589 >seq7818 Length=84771923 Score = 91.5 bits (100), Expect = 3e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | ||| ||| || || || || | Sbjct 26785816 ACCACCACCAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGATGG 26785758 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || |||||||| ||| ||| || ||||||||||| | |||||| |||||| | Sbjct 26785757 ACAAAGTACGTTCATCTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACAAG 26785698 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||| |||| ||||| || || || ||| |||| | | | | | || | ||| | Sbjct 26785697 GAATTTCTTCCTTATCCTGAATCTTGACCTTTGCATTGTCTGTTGTAGCCGAGGGTTCAA 26785638 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| || || || || || | ||||| | || ||||||||||| Sbjct 26785637 CCTCAAGAGTGATAGTCTTCCCGGTAAGGGTTTTCACGAAAATCTGCATTTT 26785586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984380705347200