Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7782 84.2 6e-11 seq7767 84.2 6e-11 >seq7782 Length=35566003 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||||| ||| | | ||| ||||| || |||||| Sbjct 27279781 GCTTCACCTGAGGATATTAAAAAGGCTTATCGTAAAGTGGCACTTAAATGGCACCCTGAT 27279722 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 27279721 AAAAATCCAGAAAATAAAGAAGAAGCTGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 27279662 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 || | || ||||||| |||||| Sbjct 27279661 GAGGTATTATCAAATAATGAAAAA 27279638 >seq7767 Length=50048226 Score = 84.2 bits (92), Expect = 6e-11 Identities = 268/403 (67%), Gaps = 22/403 (5%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| | | || | || ||||||||||||||| | ||| | | | Sbjct 16035876 TTTGTCATCTTCCCTGTCGGGTACCATGATATTTGGCAGATGTATGAGAAAGCTGAGGCT 16035935 Query 133136 TTATTTTGGACTTCAACTGAA---GTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAG 133190 | ||||||| || ||||| || ||| | ||||| ||| ||| ||| |||| Sbjct 16035936 TCCTTTTGGA---CAGCTGAAGAGGTGGATCTTTCCAAGGACATTCAG--CACCAGGAAT 16035990 Query 133191 CCCTTA---CTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGA 133247 |||| | ||| ||| || | || || || | | | | || | || || ||||| ||| Sbjct 16035991 CCCTGAAGCCTGAGGA-GAGATACTTTCTA-TCCCACG-TTCTGGCTTTCTTTGCGCCGA 16036047 Query 133248 GTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCG 133307 ||||||| || || |||||| || | ||||||| ||||||||| | | | Sbjct 16036048 GTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACAG 16036107 Query 133308 AAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCA--CATA 133365 ||||||| || ||||| | | ||||| |||||||| ||||||||| | | | Sbjct 16036108 AAGCCCGCTGTTTCTATGGCTTCCGAATTGCCATGGAAAACATCCATTCTGAGATGTACA 16036167 Query 133366 TTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGC 133425 ||| ||| ||||| ||||| | |||||| || | | | | || |||||||| Sbjct 16036168 GTCTCCTC--ATTGACACTTATGTTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAACGC 16036225 Query 133426 CATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGC 133467 | | | || | | |||||| | || ||||| | |||||||| Sbjct 16036226 C-CTCGAGACAATGCCTTGTGTAAAGAAGAAGGCAGACTGGGC 16036267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471669152476864