Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7846 113 3e-20 seq7828 113 3e-20 seq7767 113 3e-20 seq7857 100 2e-16 seq7823 95.1 9e-15 seq7818 95.1 9e-15 seq7858 89.7 4e-13 >seq7846 Length=12828309 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || ||||| || || || ||||| || || | Sbjct 9163009 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAC 9163068 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || ||||| || ||| | ||||| || ||||| || || || Sbjct 9163069 AGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9163128 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | || ||||| | || | |||||| | || || Sbjct 9163129 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 9163188 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| || || || |||||||| Sbjct 9163189 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 9163235 >seq7828 Length=21597463 Score = 113 bits (124), Expect = 3e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAAT 29632 || ||| | |||||| ||||| || ||||||||||| || || | ||| || || || Sbjct 14213374 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGG-ACGTCCAT 14213432 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || | Sbjct 14213433 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 14213492 Query 29693 CTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || ||| || | || | | |||||| || || || |||| || || ||||| || Sbjct 14213493 TCTG-AATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATG 14213551 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || | |||||| || || |||||||| || Sbjct 14213552 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 14213589 >seq7767 Length=50048226 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| | |||||| || || || ||||||||||| || || | | ||||| ||| || Sbjct 33066747 CACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTC 33066806 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || || || Sbjct 33066807 CAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 33066866 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| || | || ||| |||||| || || || | || || || || || || || | Sbjct 33066867 -AATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCT 33066925 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || | |||||| || || |||||||| || Sbjct 33066926 TCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 33066959 >seq7857 Length=43258702 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||| |||| || || || || ||||| || ||||||||||| | | Sbjct 31543673 CCACCTCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 31543732 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 31543733 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGG 31543792 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | || || ||| |||| | ||||| | || || Sbjct 31543793 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGATGTCACTGGGCTCCACC 31543852 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | || || ||||| |||| ||| || || || ||||||||||| Sbjct 31543853 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 31543902 >seq7823 Length=12955506 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/240 (68%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||| |||| || || || || ||||| || ||||| ||||| | | Sbjct 3355324 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3355265 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| ||| | || | || ||||| || || || Sbjct 3355264 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 3355205 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | || || ||| |||| | |||||| | || || Sbjct 3355204 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 3355145 Query 29740 TCAAGAGTTATAGTTTTGCC----------AGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| ||| ||||| || || || ||||||||||| Sbjct 3355144 TCCAGGGTGATGGTCTTGCCNNNNNNNNNNAGTCAAGGTCTTCACGAAGATCTGCATTTT 3355085 >seq7818 Length=84771923 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA-ATCCGCAATGGTGCGAGAAT 29632 || ||| | |||||| ||||| || ||||||||||| || || ||| | | || || Sbjct 26785801 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGATGGACAAAG-TACGTTCAT 26785743 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | | ||||| ||||||||| | |||| ||| |||||||| ||||| | || || | Sbjct 26785742 CTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACAAGGAATTTCTTCCTTAT 26785683 Query 29693 CTTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 | || ||| || |||| || | ||| || | || |||| || |||||||| || Sbjct 26785682 CCTG-AATCTTGACCTTTG-CATTGTCTGTTGTAGCCGAGGGTTCAACCTCAAGAGTGAT 26785625 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || || || | |||||| || || ||||||||||| Sbjct 26785624 AGTCTTCCCGGTAAGGGTTTTCACGAAAATCTGCATTTT 26785586 >seq7858 Length=29646629 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || ||||||||||| || || | | |||| || Sbjct 12424749 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCATT 12424808 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| |||| ||| |||||||| || ||||| || || || || Sbjct 12424809 TTCCAGTTGCTTGCCAGCAACGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 12424868 Query 29694 TTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || ||| |||||| || || || |||| || || || || | Sbjct 12424869 CTG-AATCTTGGCCTGTACATTTTCTATTGTATCCGAGGGTTCAGGCTCGAGGGTGATGG 12424927 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 | || || || | |||||| | || ||||||| Sbjct 12424928 TCTTCCCCGTGAGGGTTTTCAGGAAAATCTGCA 12424960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385182242069952