Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq7846 113 3e-20
seq7828 113 3e-20
seq7767 113 3e-20
seq7857 100 2e-16
seq7823 95.1 9e-15
seq7818 95.1 9e-15
seq7858 89.7 4e-13
>seq7846
Length=12828309
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| ||||| || || ||||| || || || ||||| || || |
Sbjct 9163009 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAC 9163068
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| || || || ||||| || ||| | ||||| || ||||| || || ||
Sbjct 9163069 AGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9163128
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||||||||| || | || ||||| | || | |||||| | || ||
Sbjct 9163129 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 9163188
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || || || ||||| || || || ||||||||
Sbjct 9163189 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 9163235
>seq7828
Length=21597463
Score = 113 bits (124), Expect = 3e-20
Identities = 159/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAAT 29632
|| ||| | |||||| ||||| || ||||||||||| || || | ||| || || ||
Sbjct 14213374 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGG-ACGTCCAT 14213432
Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692
| || ||||| ||||||||| | |||| ||| |||||||| || ||||| || || || |
Sbjct 14213433 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 14213492
Query 29693 CTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| ||| || | || | | |||||| || || || |||| || || ||||| ||
Sbjct 14213493 TCTG-AATCTTGGCCTTTATATTTTCTATTGTATCCGAGGGTTCAACCTCGAGAGTGATG 14213551
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || | |||||| || || |||||||| ||
Sbjct 14213552 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 14213589
>seq7767
Length=50048226
Score = 113 bits (124), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636
||| | |||||| || || || ||||||||||| || || | | ||||| ||| ||
Sbjct 33066747 CACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTC 33066806
Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696
||||| ||||||||| | |||| ||| |||||||| || ||||| || || || || ||
Sbjct 33066807 CAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 33066866
Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755
||| || | || ||| |||||| || || || | || || || || || || || |
Sbjct 33066867 -AATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGATCAACCTCGAGGGTGATGGTCT 33066925
Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || | |||||| || || |||||||| ||
Sbjct 33066926 TCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 33066959
>seq7857
Length=43258702
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || |||| |||| |||| || || || || ||||| || ||||||||||| | |
Sbjct 31543673 CCACCTCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 31543732
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||| ||| | || | || ||||| || || ||
Sbjct 31543733 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGG 31543792
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| ||||| | || || ||| |||| | ||||| | || ||
Sbjct 31543793 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGATGTCACTGGGCTCCACC 31543852
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || | || || ||||| |||| ||| || || || |||||||||||
Sbjct 31543853 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 31543902
>seq7823
Length=12955506
Score = 95.1 bits (104), Expect = 9e-15
Identities = 164/240 (68%), Gaps = 10/240 (4%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||||| ||||| |||| || || || || ||||| || ||||| ||||| | |
Sbjct 3355324 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3355265
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || ||||| ||| | || | || ||||| || || ||
Sbjct 3355264 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 3355205
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||| ||||| | || || ||| |||| | |||||| | || ||
Sbjct 3355204 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 3355145
Query 29740 TCAAGAGTTATAGTTTTGCC----------AGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || ||||| ||| ||||| || || || |||||||||||
Sbjct 3355144 TCCAGGGTGATGGTCTTGCCNNNNNNNNNNAGTCAAGGTCTTCACGAAGATCTGCATTTT 3355085
>seq7818
Length=84771923
Score = 95.1 bits (104), Expect = 9e-15
Identities = 156/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA-ATCCGCAATGGTGCGAGAAT 29632
|| ||| | |||||| ||||| || ||||||||||| || || ||| | | || ||
Sbjct 26785801 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGATGGACAAAG-TACGTTCAT 26785743
Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692
| | ||||| ||||||||| | |||| ||| |||||||| ||||| | || || |
Sbjct 26785742 CTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACAAGGAATTTCTTCCTTAT 26785683
Query 29693 CTTGTAATTTTTG--TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
| || ||| || |||| || | ||| || | || |||| || |||||||| ||
Sbjct 26785682 CCTG-AATCTTGACCTTTG-CATTGTCTGTTGTAGCCGAGGGTTCAACCTCAAGAGTGAT 26785625
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||| || || || | |||||| || || |||||||||||
Sbjct 26785624 AGTCTTCCCGGTAAGGGTTTTCACGAAAATCTGCATTTT 26785586
>seq7858
Length=29646629
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || ||||||||||| || || | | |||| ||
Sbjct 12424749 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCATCCATT 12424808
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| |||| ||| |||||||| || ||||| || || || ||
Sbjct 12424809 TTCCAGTTGCTTGCCAGCAACGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 12424868
Query 29694 TTGTAATTTTTGTTTG-ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
|| ||| || | || ||| |||||| || || || |||| || || || || |
Sbjct 12424869 CTG-AATCTTGGCCTGTACATTTTCTATTGTATCCGAGGGTTCAGGCTCGAGGGTGATGG 12424927
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785
| || || || | |||||| | || |||||||
Sbjct 12424928 TCTTCCCCGTGAGGGTTTTCAGGAAAATCTGCA 12424960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385182242069952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |