Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq7846 96.9 3e-15
>seq7846
Length=12828309
Score = 96.9 bits (106), Expect = 3e-15
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230
||||| || |||||||| |||| |||||| |||| ||||||||||||||||||| | ||
Sbjct 7091839 CACAAAATCCAAAACAGATTATGAGAAAAGTTCAATATAATTTATTAAATAATTCCCGAG 7091898
Query 231 GGCTTCTTTAAGAAGCATTAACA 253
|||| ||| ||| ||||||||||
Sbjct 7091899 GGCTCCTTGAAGGAGCATTAACA 7091921
Score = 91.5 bits (100), Expect = 1e-13
Identities = 466/728 (64%), Gaps = 79/728 (11%)
Strand=Plus/Plus
Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130
||||||| |||| ||| |||||||||| ||| ||| |||| || | | |||||||
Sbjct 7093804 CCACAGCCCTAGGTTCAGGTCTGAAAA-GAGGAGGCTTCTTCTGGGGGCACCAGAAGGCA 7093862
Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT- 1189
||||||||||| | | |||||| ||||||| | |||||| || ||||||| ||||
Sbjct 7093863 TTTTAAAGAAATGACCCAGAAAAGAAATCTGTAGTATACTTACGTAGTCTTCCAAAAGTC 7093922
Query 1190 --TTTGAAAATGAGAACTGTAGTTCTGTGA----TTACAGCTGATTGTATGTCCCGTGGT 1243
|| || | || ||||| ||| || || | || || || || ||
Sbjct 7093923 CCTTCGACA---AGGGCTGTAATTCCAAGATGATTTTCCGCACATCACTTG----GTTGT 7093975
Query 1244 AG----TGGATGG---CCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAAC 1294
|| ||||||| ||| ||||||| || || | | | ||||||||||||||
Sbjct 7093976 AGCTGATGGATGGGCACCGTCTGGGAGGTCAGTAAAGTTTCCATGAAGCAGAGCAGGAAC 7094035
Query 1295 AGGGCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTG-CCC 1353
||||||| || | | | || ||| | | | |||| | | ||| || |
Sbjct 7094036 AGGGCAAACCTGGCGGGTCCTGGCGAAAGAAAATGATGCTGTGAGA----CACATGATCA 7094091
Query 1354 CATAC-CTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCCGGACTGAGCCCCATCC- 1411
| || || || ||| |||| ||||||| || | ||||||||| |||
Sbjct 7094092 GACACGCTGTGCCCACCCCAGCTGCCACCACC---------CCTGGCTGAGCCCC-TCCA 7094141
Query 1412 -AGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGA 1470
|||||| | || | | | ||| || |||| | ||| | | ||| | |||
Sbjct 7094142 GAGTCTTCCCCTCTTTTTGAGGAGACAAGACCATGCTCACGAAC----GGGGCGGCGGGA 7094197
Query 1471 CCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAAC 1530
|| |||||| | |||| | || | ||| | ||| || | |||||||||||
Sbjct 7094198 CCCGGTAGTACCTGCGTGGGAGAGCATGG--TGAGTGCACGAAGC--CTGCTTTGGCAAC 7094253
Query 1531 AGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTT 1590
|||| || |||| |||||||||||| || | | |||| |||||||||||| || |
Sbjct 7094254 AGCTTCTGGAGTCAGATGTGCTCGCCATGGTCCTCGGGA--GATATATAAAGGGCCAGAT 7094311
Query 1591 GTAAGG---AGGAGCACTAAAAGT--ACCGCCCACGGTAAAGTCATTACT---------- 1635
|| || | || | || || ||||||| || ||| ||||| |
Sbjct 7094312 GTGGGGGAAAAGAATGATCAATGTCCCCCGCCCATGGCAAAATCATTGATCAGCTTTTCT 7094371
Query 1636 -CAGAAAACATTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAA- 1693
||||||||| ||||| || ||| | || |||| ||| || |||| |||||||
Sbjct 7094372 CCAGAAAACA-CTCAAAATTCTGCGGCCCGAGTTTGGGCGAAATCAGGGCTGGAAGGAAG 7094430
Query 1694 --ATGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCG---GG 1748
||| |||||||| || ||||||||| |||| || | || | |||||| | ||
Sbjct 7094431 CGCTGAGGTTACCCTCAA----GGCAGATGCCTGACTCAGTACAGACACACACAGGAAGG 7094486
Query 1749 CACCCACA 1756
||| ||||
Sbjct 7094487 CACACACA 7094494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438516845696000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |