Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq7846 96.9 3e-15 >seq7846 Length=12828309 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || |||||||| |||| |||||| |||| ||||||||||||||||||| | || Sbjct 7091839 CACAAAATCCAAAACAGATTATGAGAAAAGTTCAATATAATTTATTAAATAATTCCCGAG 7091898 Query 231 GGCTTCTTTAAGAAGCATTAACA 253 |||| ||| ||| |||||||||| Sbjct 7091899 GGCTCCTTGAAGGAGCATTAACA 7091921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 466/728 (64%), Gaps = 79/728 (11%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGCA 1130 ||||||| |||| ||| |||||||||| ||| ||| |||| || | | ||||||| Sbjct 7093804 CCACAGCCCTAGGTTCAGGTCTGAAAA-GAGGAGGCTTCTTCTGGGGGCACCAGAAGGCA 7093862 Query 1131 TTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT- 1189 ||||||||||| | | |||||| ||||||| | |||||| || ||||||| |||| Sbjct 7093863 TTTTAAAGAAATGACCCAGAAAAGAAATCTGTAGTATACTTACGTAGTCTTCCAAAAGTC 7093922 Query 1190 --TTTGAAAATGAGAACTGTAGTTCTGTGA----TTACAGCTGATTGTATGTCCCGTGGT 1243 || || | || ||||| ||| || || | || || || || || Sbjct 7093923 CCTTCGACA---AGGGCTGTAATTCCAAGATGATTTTCCGCACATCACTTG----GTTGT 7093975 Query 1244 AG----TGGATGG---CCG--TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAAC 1294 || ||||||| ||| ||||||| || || | | | |||||||||||||| Sbjct 7093976 AGCTGATGGATGGGCACCGTCTGGGAGGTCAGTAAAGTTTCCATGAAGCAGAGCAGGAAC 7094035 Query 1295 AGGGCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTG-CCC 1353 ||||||| || | | | || ||| | | | |||| | | ||| || | Sbjct 7094036 AGGGCAAACCTGGCGGGTCCTGGCGAAAGAAAATGATGCTGTGAGA----CACATGATCA 7094091 Query 1354 CATAC-CTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCCGGACTGAGCCCCATCC- 1411 | || || || ||| |||| ||||||| || | ||||||||| ||| Sbjct 7094092 GACACGCTGTGCCCACCCCAGCTGCCACCACC---------CCTGGCTGAGCCCC-TCCA 7094141 Query 1412 -AGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTGTAGGA 1470 |||||| | || | | | ||| || |||| | ||| | | ||| | ||| Sbjct 7094142 GAGTCTTCCCCTCTTTTTGAGGAGACAAGACCATGCTCACGAAC----GGGGCGGCGGGA 7094197 Query 1471 CCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTGGCAAC 1530 || |||||| | |||| | || | ||| | ||| || | ||||||||||| Sbjct 7094198 CCCGGTAGTACCTGCGTGGGAGAGCATGG--TGAGTGCACGAAGC--CTGCTTTGGCAAC 7094253 Query 1531 AGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGCTAGTT 1590 |||| || |||| |||||||||||| || | | |||| |||||||||||| || | Sbjct 7094254 AGCTTCTGGAGTCAGATGTGCTCGCCATGGTCCTCGGGA--GATATATAAAGGGCCAGAT 7094311 Query 1591 GTAAGG---AGGAGCACTAAAAGT--ACCGCCCACGGTAAAGTCATTACT---------- 1635 || || | || | || || ||||||| || ||| ||||| | Sbjct 7094312 GTGGGGGAAAAGAATGATCAATGTCCCCCGCCCATGGCAAAATCATTGATCAGCTTTTCT 7094371 Query 1636 -CAGAAAACATTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAGGAA- 1693 ||||||||| ||||| || ||| | || |||| ||| || |||| ||||||| Sbjct 7094372 CCAGAAAACA-CTCAAAATTCTGCGGCCCGAGTTTGGGCGAAATCAGGGCTGGAAGGAAG 7094430 Query 1694 --ATGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCG---GG 1748 ||| |||||||| || ||||||||| |||| || | || | |||||| | || Sbjct 7094431 CGCTGAGGTTACCCTCAA----GGCAGATGCCTGACTCAGTACAGACACACACAGGAAGG 7094486 Query 1749 CACCCACA 1756 ||| |||| Sbjct 7094487 CACACACA 7094494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438516845696000