Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq7788 271 9e-68 seq7816 206 3e-48 seq7818 138 1e-27 seq7819 100 3e-16 >seq7788 Length=6094078 Score = 271 bits (300), Expect = 9e-68 Identities = 625/932 (67%), Gaps = 17/932 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| || Sbjct 1359122 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCTG 1359063 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| | | | | ||||| || | ||||| | Sbjct 1359062 TGTCAAACTTGTTGGCAAACAAGTGGTGCTTG--CGT-AGCATCCAGTTCAAGTCCCCTG 1359006 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||||||||||||||| || ||||| || || || ||||| || ||||| |||| || | Sbjct 1359005 CTCCGAACACGCACACAGAACGCACATGGACCCCACTGCAGGGTGGATAGGGGGCACCCT 1358946 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | |||||||| ||| | || ||||| || || ||||| | || || |||||||| | Sbjct 1358945 TGGAAACATCCCCTTCGAAATACTGCCATTTGACAAACCTTGCAATTGCATGCATGTCAG 1358886 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || ||| | || | ||||| | || Sbjct 1358885 ACATGTCATACTTCTGGCTTAAGGACAGTGAGCCTGGGACATCAGGGATCCTCTGAATAG 1358826 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || || || || || | ||||||||| |||| || Sbjct 1358825 TGGCCCAGAGATACTCATCCGGGCTGTATGTATCTTTAGCCCACTCCATAAACTTTTGGA 1358766 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||| | || ||||| ||| | || | ||| || || || | Sbjct 1358765 TTTTTTCATTCTCTAGCACATACCCCACGTACATCCTACTGACCACAAAATAGGCACTGC 1358706 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||||||| || |||||| |||||||| | | Sbjct 1358705 CTGAAAACAGAGGTGTTTCGAGAGGAGGGTGCATTTTGTCAGTCCCCGTGTTCGTCAGC- 1358647 Query 162539 TTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGGG 162594 ||||| || || || ||| | ||| ||||||| | | ||| ||| | | Sbjct 1358646 TTCCCATTA--ACAAC-TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATT 1358590 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || ||||| |||| |||| | | ||| |||| || || || || || Sbjct 1358589 CTCTCAGTTTCTAGGTTGTTTTCACCCATTAGCGACTTGAGCTTCCGGACAATTTCCAGG 1358530 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| |||||| || | ||||| ||||| || | || ||||| | | || Sbjct 1358529 TTGGTTTTAATGGGAAAATCCATACCGCAAAGATTTATCAAGTACTTCCAATCTGCACTC 1358470 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | ||| || || || | ||||| || || ||||| || |||||||| || || ||| Sbjct 1358469 ATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGAGGCATAC 1358410 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| ||||||||||| ||| || || | || || ||| Sbjct 1358409 ACCACACTCTCCAGCTGACTGGCCACAAAGACATTACTGAAGCAGGACGCGATGCCAATC 1358350 Query 162835 A---CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 | |||||| || | ||| || | || || || ||||| | |||||| | |||| Sbjct 1358349 ACCGCGGCCAAAAAGGA-ATC--CTCTGACTTTCTGTCCACGTGAATGCAGTAGAAATTC 1358293 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||| ||||| | || || | ||| || || || || || ||||| Sbjct 1358292 TGAGGCATATAGATGGCTCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 1358233 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | |||||| |||||||| ||||| |||| || Sbjct 1358232 AGAGAATATGCTATGGGAAACTCTTCCTCTTC 1358201 >seq7816 Length=41823926 Score = 206 bits (228), Expect = 3e-48 Identities = 222/294 (76%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| | || ||||| | || || || || || || ||||||||||| || | | Sbjct 30774229 CAGAGAGGCTGAGGCAGGTTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 30774288 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||||||||| || || | || || || ||| Sbjct 30774289 ACTTGTAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGA 30774348 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || ||||| | | ||| || || | ||||||||| ||||| || || | Sbjct 30774349 GTTCCAGCTGGGTGATGTTTATCTTGTCTTTATAGGCAGGCTGGACCACAACCCCATGGT 30774408 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || | Sbjct 30774409 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACAGCCTTGATTTTCTGCCATGTCACAA 30774468 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 | || ||||| | | |||| |||||||||||||| |||||||||||||||| Sbjct 30774469 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCA 30774522 Score = 114 bits (126), Expect = 1e-20 Identities = 177/251 (71%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| ||| | || ||| |||||| ||| | || | ||| | |||||||| Sbjct 30771646 ACAGTTTGCATGACGCTGGTCACATTCCCCAGGTGCAGCACCTGGCAGACCACCTCCT-- 30771703 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||||||||| || || ||||| | || |||| ||| || ||||| || ||||| Sbjct 30771704 -TCCCCACTTGACGCTTGGGGTCTTTGATCTGGAGAACGCTCGTGACAGACGTGGTCCCA 30771762 Query 171623 TTACGATGTA---GAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | || | |||| | |||||| ||||| || || || || | || ||||| Sbjct 30771763 TTGGGGTGAAAGAGAACC---TCAGTACTGTTTTCAATCCCTGACCCAGATACCTTCCAG 30771819 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 | || ||||| ||||| | ||| | ||||||||||| || |||| ||||||||| Sbjct 30771820 GAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCGAAG 30771879 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 30771880 AATTTATAGTG 30771890 >seq7818 Length=84771923 Score = 138 bits (152), Expect = 1e-27 Identities = 448/682 (66%), Gaps = 19/682 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| || | | || || | | || Sbjct 63725451 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 63725510 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 63725511 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 63725570 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || ||||| || || |||| || || || | |||||| | || || | || || Sbjct 63725571 TCTCATAATTTTCCCTAGATGGCCCCAGAACAACGGGTACAGAGCCAGCTAGAAAAGCAT 63725630 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 63725631 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAAAATT 63725690 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 63725691 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 63725748 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 63725749 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTTGCAT 63725807 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 63725808 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 63725862 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | || || ||||| || ||||| | Sbjct 63725863 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTG 63725921 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 |||| || | ||| || | || | ||||| |||| ||| || | || |||| ||| Sbjct 63725922 AGTCACGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGTTCGATGCCACTCTTTTG--GGG 63725979 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | | Sbjct 63725980 CGTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCCTG 63726039 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | |||| || |||| ||| || |||| |||||| | | || |||| | Sbjct 63726040 CTGTGGTAAGTTAGTCAGATCCCAACTGATGTCTCGGTGGTGGATCAGAACTGCATGAGA 63726099 Query 177539 TTTGTAATAAACAGATCTGTCT 177560 ||||| || | ||| | |||| Sbjct 63726100 TTTGTTGTATAGAGAACGGTCT 63726121 >seq7819 Length=28646420 Score = 100 bits (110), Expect = 3e-16 Identities = 227/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | ||| || Sbjct 16270963 ACCATCTCAGCATTGGTCTTTATAGGAAAGTCCGTCCCACATGTATTCAGTAAGTATCTC 16271022 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 ||| || |||| || | | || |||| | |||||| || || ||||| || | Sbjct 16271023 CACGGCAC--TGAGCTCTGGAGCAAGTCCTCCATACAGTTTAGGTCAGCCTGCACCCTGG 16271080 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| |||| Sbjct 16271081 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCACG 16271140 Query 162821 AAACTATCCCCATCACGGCCAG--TGAGAACATCGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || ||| || | || ||| ||| | || || | |||| ||| || || || Sbjct 16271141 ACACAATCGCCTTGACTGCCTCCTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 16271198 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| | ||| || || |||| ||||| Sbjct 16271199 ACAGTATATGTTCTGAGGGGCATACAAAGCTCGCAGCAGTCTTTCAAAGTTCTCGATCTT 16271258 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || || ||||| || Sbjct 16271259 CTCATGGACCACCATAGAGTATGCAATAGGGAAGTC 16271294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578375082291200