Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7846 116 2e-21 seq9 91.5 1e-13 seq7823 84.2 1e-11 >seq7846 Length=12828309 Score = 116 bits (128), Expect = 2e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| ||| || || |||||||| || | Sbjct 9163007 CACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTG 9163066 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| |||| |||| ||||| |||||||| ||||| | |||||| || | | Sbjct 9163067 ACAGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGG 9163126 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| || ||| || | | | || | |||||| || | ||| Sbjct 9163127 GGATGCCCTCTTTGTCCTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 9163185 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || || | ||||| || ||||| || || || || || ||||||||||| || Sbjct 9163186 ACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATCGT 9163238 >seq9 Length=2205763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| |||||| || || || || || || || || || | || || Sbjct 1749342 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTC 1749401 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| || ||||||| || ||||||||| || |||| | || || ||||| Sbjct 1749402 CAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 1749461 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTC--CACGTCAACCGTGATCGT 33716 ||||| ||| | ||| ||| |||||| || | || ||| |||| ||||| || Sbjct 1749462 GATTTTGGCTTTGA-CATTCTCAATGGTGTCACTGGGCTCGACACCTCAAGGGTGATGGT 1749520 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || |||||||||||||| Sbjct 1749521 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1749553 >seq7823 Length=12955506 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| || ||||| |||||| || ||||||||||| || Sbjct 3355552 CCACCCCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 3355493 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || |||||||| | | |||||| || | || Sbjct 3355492 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGG 3355433 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || ||||| || || || ||| || | || | |||||| || | ||||| Sbjct 3355432 ATGCCCTCTTTATCTTGGATCTTGGCCTTC-ACGTTTTCGATGGTGTCACTGGGCTCCAC 3355374 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 3355373 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3355326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328672464138240