Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7767 230 2e-55 seq7820 170 2e-37 seq7842 102 6e-17 seq7786 86.0 5e-12 seq7734 82.4 6e-11 >seq7767 Length=50048226 Score = 230 bits (254), Expect = 2e-55 Identities = 397/570 (70%), Gaps = 9/570 (2%) Strand=Plus/Plus Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780 || ||||| || ||||| ||||| | ||||| |||| || ||||||||||| ||||| Sbjct 16035897 TACCATGATATTTGGCAGATGTATGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAG 16035956 Query 43781 GTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATT 43838 || ||| | | || ||| | ||||| | || | | || || | || | | | | Sbjct 16035957 GTGGATCTTTCCAAGGACATTCAGCACCAGGAATCCC--TGAAGCCTGAGGAGAGATACT 16036014 Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 || |||| ||| |||| || ||||| |||| || || ||||| |||||||| |||| Sbjct 16036015 TTCTATCCCACGTTCTGGCTTTCTTTGCGCCGAGTGATGGCATAGTAAATGAAAACTTGG 16036074 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 | |||||| ||||||||||| |||| ||||||| || ||||| ||||| || | | Sbjct 16036075 TGGAGCGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCGA 16036133 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017 |||||||| ||||| || ||||| || ||||||||||| || || || || || | ||| Sbjct 16036134 ATTGCCATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACTTATGTTAAA 16036193 Query 44018 GATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACAT 44077 ||| | || | | | | || || || | || ||| | ||| | || | Sbjct 16036194 GATTCCAAAGAAAGGGAATTTCTCTTCAACGCCCTCGAGACAATGCCTTGTGTAAAGAAG 16036253 Query 44078 AAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAA--ATGATTCTTTTGGAGAACGACTT 44134 || |||||||||||| | | |||| | ||| | | | | | || ||||| || Sbjct 16036254 AAGGCAGACTGGGCCTTGCATTGGACTGGGGACAAAGAGGCTACCTACGGGGAACGGGTT 16036313 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || | ||||| | ||||||||| || |||||||| || || |||||| | ||||| ||| Sbjct 16036314 GTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTGG 16036373 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | |||||||| | |||||||||| | |||||| ||||| | || || | ||| Sbjct 16036374 CTCAAGAAACGTGACCTGATGCCTGGCCCCATGTTTTCCAATGAACTTATTAGCAGAGAT 16036433 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || ||||| || || ||||| ||| || Sbjct 16036434 GAGGGTTTACACTGTGACTTTGCCTGCCTG 16036463 >seq7820 Length=31847680 Score = 170 bits (188), Expect = 2e-37 Identities = 600/926 (65%), Gaps = 27/926 (3%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 || |||||||| || | | |||||| | || || || | || ||||| | ||||| Sbjct 14843042 CTGACAGAAAACCCTCTTCGCTTTGTCATCTTCCCTATGAAGTACCATGATCTTTGGCAG 14843101 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 || | || ||||| |||| || ||||||||||| ||||| || || | | || ||| Sbjct 14843102 ATATGTAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGAATCTTTCCAAGGAC 14843161 Query 43799 TTAGCACATTGG--ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTT--- 43853 | ||| ||| || || | || || | || | | |||||||| | ||| Sbjct 14843162 ATTCAACACTGGGAATCGC--TGAAGCCTGAGGAGAGAGATTTTATACCCCACGTTCACA 14843219 Query 43854 ---TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTG 43910 |||| || ||||| ||||| | || ||||| |||||||| ||||| |||| || Sbjct 14843220 TTCTGGCTTTCTTTGCGGCGAGTGTTGGCATAGTAAATGAAAACTTGGTGGAGCGGTGTG 14843279 Query 43911 CGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAA 43970 ||||||||| | | ||||||| | ||||| ||||| || ||||||||||| |||| Sbjct 14843280 GCCAAGAAGTTGAGATGACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAAA 14843339 Query 43971 ATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA 44030 | || ||||| || |||| ||||| || | || || || || |||||| | |||| Sbjct 14843340 ACATCCATTCTGAGATGTGTAGTCTCCTCACTGACACTTATATTAAAGATTCCAAAGAGA 14843399 Query 44031 -AGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGG 44089 || || | || || | || || ||| | ||| | | || ||||||||| Sbjct 14843400 CAGAAT-TTCTCTTCAACACCATCGAGACAATGCCTTGTGGAAGGAAGAAGGCAGACTGG 14843458 Query 44090 GCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 ||| | ||| | | | | | | | | || ||| | ||| | ||||| Sbjct 14843459 GCCTTGCGTTGGGTTGGGGACAAAGAGGCTACCTACGGGGAATGGGATGTGGACTTTGCT 14843518 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | |||||| || | ||||| || || | |||| | ||||| ||| | |||||| | Sbjct 14843519 GCCACGGAAGGAATCTCCTTTTTTGGTTCTTCTGCGTCGATATTCTGGCTCAAGAAATGC 14843578 Query 44207 GGTTTGATGCCTGG-GTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACA 44265 | |||||||||| | | |||||| |||||| | || || | ||||| || ||||| Sbjct 14843579 AGCCTGATGCCTGGCCTCGCGGTTTTCCAATGAGCTTATTAGCAGAGATGAGGGTTTACA 14843638 Query 44266 TTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGAC 44325 | | ||||| ||| || | | | | || | | |||| |||||| ||| Sbjct 14843639 CCACAACTTTGCCTGCCTGATGTTCAAACACCT---GGTCCATAAACCTTCAGAGCAGAG 14843695 Query 44326 AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 | | | || || || | | || || | |||||| || || || | || || || Sbjct 14843696 AGTGAAGGAAATAATTATCAATGCCGTTAGGATAGACCAGGAGTTCCTCCCAGAGGCCTT 14843755 Query 44386 ACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTG 44444 || | || | || || ||||| || || || | | || || |||||||||| ||| | Sbjct 14843756 GCCCGCGAAGCTCATTGGGATGAACTGCACGTTAG-TAAAGCAGTATATTGAATTCATGG 14843814 Query 44445 CAGATCGTTTACTT---TTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGT 44501 |||| | |||| | |||||| |||| || | | ||| |||| || | Sbjct 14843815 CAGA---CTGACTTAGGTAGGAACTAGGTTTTAGCAAGGTTTCCAGAGTAGAAAATCCAT 14843871 Query 44502 TTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTG 44561 |||| ||| ||| |||||||| ||||||| || || ||||| ||||| || | | | Sbjct 14843872 TTGACCTTAGGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGGAG 14843931 Query 44562 GAGAATATCAGCGAATGGGCGTCATG 44587 | | |||||| | || || || ||| Sbjct 14843932 GCCAGTATCAGAGGATAGGAGTGATG 14843957 >seq7842 Length=42459490 Score = 102 bits (112), Expect = 6e-17 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||| ||||| ||||| |||||| || ||||| ||||| || |||||||| Sbjct 7546320 CGGTTTAGCCAAGAGGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 7546378 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||||||||| || || || || || || |||||| Sbjct 7546379 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACTTATATTAAAGAT 7546436 >seq7786 Length=83011774 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || ||||| || ||||| |||||||| || ||||| | Sbjct 48108481 AAAATCCCTTTGATTTTATGGAGAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 48108422 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| |||| ||| ||||| || | | |||||| Sbjct 48108421 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 48108387 >seq7734 Length=11085724 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/150 (72%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------C 19601 ||||||||| || || | |||||| | || || ||||| ||||| ||||| | Sbjct 188679 TTTGCACATAATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGC 188620 Query 19602 TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 |||| | ||||| ||||||||||| ||||| || | ||||| ||| | || || || Sbjct 188619 TGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATTGATGGGGT 188560 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGG 19691 | |||||||| || || ||||| ||||| Sbjct 188559 AGAGCAACTGAACAACATCTTAGTCATTGG 188530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397417868071360