Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7823 89.7 4e-13 seq9 87.8 2e-12 seq7870 84.2 2e-11 seq7782 82.4 6e-11 >seq7823 Length=12955506 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| || | |||| | ||||| ||||| || || Sbjct 3355522 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 3355463 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| | ||| || || || || | ||||||||||| ||||||| ||| Sbjct 3355462 GCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 3355403 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 3355402 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3355343 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 3355342 TTCACGAAGATCTGCAT 3355326 >seq9 Length=2205763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || ||||| ||||| || | || | ||||| Sbjct 1749343 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTCC 1749402 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || ||| |||||||| || || ||||| | ||||| || || | Sbjct 1749403 AGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 1749462 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCT--AGAGTTATAGATT 27216 || ||| ||| | | || | ||||| ||| || || || || || || | | Sbjct 1749463 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACACCTCAAGGGTGATGGTCT 1749522 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 |||||||||| || ||||||||||| ||||| |||| Sbjct 1749523 TGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 1749559 >seq7870 Length=10551609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 |||||||| ||| |||||||| ||||| |||||||||||||| || || ||||| Sbjct 10330126 GCCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTC 10330067 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 | | | | |||| ||||| ||||| | |||| | ||||||||| ||||| ||| Sbjct 10330066 AGTAGCTGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGA 10330007 Query 131150 CCCTGTATCCC 131160 || |||| ||| Sbjct 10330006 CCTTGTACCCC 10329996 >seq7782 Length=35566003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| |||||||| || || |||| |||||||| || || ||||| | |||| || | Sbjct 14262556 CTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGT 14262615 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | ||| ||| ||| | | || | ||||| ||| ||||| || || || || Sbjct 14262616 CTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGT 14262675 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 ||||||||||| || ||||||||||| ||||| |||| Sbjct 14262676 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 14262715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424893631793664