Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq7823 89.7 4e-13
seq9 87.8 2e-12
seq7870 84.2 2e-11
seq7782 82.4 6e-11
>seq7823
Length=12955506
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| || || ||||| || | |||| | ||||| ||||| || ||
Sbjct 3355522 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 3355463
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| ||||||| | ||| || || || || | ||||||||||| ||||||| |||
Sbjct 3355462 GCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 3355403
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | |||| | ||||| ||| || || || || || || | ||||| ||||| ||
Sbjct 3355402 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3355343
Query 27231 TTCACAAAGATTTGCAT 27247
||||| ||||| |||||
Sbjct 3355342 TTCACGAAGATCTGCAT 3355326
>seq9
Length=2205763
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/217 (69%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || ||||| || ||||| ||||| || | || | |||||
Sbjct 1749343 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTCC 1749402
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|||||||| || || ||| |||||||| || || ||||| | ||||| || || |
Sbjct 1749403 AGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 1749462
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCT--AGAGTTATAGATT 27216
|| ||| ||| | | || | ||||| ||| || || || || || || | |
Sbjct 1749463 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACACCTCAAGGGTGATGGTCT 1749522
Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253
|||||||||| || ||||||||||| ||||| ||||
Sbjct 1749523 TGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 1749559
>seq7870
Length=10551609
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089
|||||||| ||| |||||||| ||||| |||||||||||||| || || |||||
Sbjct 10330126 GCCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTC 10330067
Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149
| | | | |||| ||||| ||||| | |||| | ||||||||| ||||| |||
Sbjct 10330066 AGTAGCTGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGA 10330007
Query 131150 CCCTGTATCCC 131160
|| |||| |||
Sbjct 10330006 CCTTGTACCCC 10329996
>seq7782
Length=35566003
Score = 82.4 bits (90), Expect = 6e-11
Identities = 114/160 (71%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153
|||| |||||||| || || |||| |||||||| || || ||||| | |||| || |
Sbjct 14262556 CTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGT 14262615
Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213
| ||| ||| ||| | | || | ||||| ||| ||||| || || || ||
Sbjct 14262616 CTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGT 14262675
Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253
||||||||||| || ||||||||||| ||||| ||||
Sbjct 14262676 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 14262715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424893631793664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |