Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7736 104 3e-17 seq7869 100 3e-16 seq7842 89.7 6e-13 seq7767 82.4 8e-11 >seq7736 Length=31055087 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 23582704 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 23582763 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| |||||||| || ||| Sbjct 23582764 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 23582823 Query 117425 ATCGT 117429 || || Sbjct 23582824 ATAGT 23582828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 23582704 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 23582763 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||||| ||||| || |||||||||||||||||| Sbjct 23582764 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 23582823 Query 152149 ATCGT 152153 || || Sbjct 23582824 ATAGT 23582828 >seq7869 Length=26620976 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 641892 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 641833 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 641832 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 641773 Query 152149 ATCGT 152153 || || Sbjct 641772 ATGGT 641768 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 641892 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 641833 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 641832 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 641773 Query 117425 ATCGT 117429 || || Sbjct 641772 ATGGT 641768 >seq7842 Length=42459490 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| || || || ||||| Sbjct 7548463 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 7548404 Query 74832 AACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || | || | || || |||||| |||||||| ||||| ||| ||||| || Sbjct 7548403 AGCCAGAATATTGACGCA-AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 7548345 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 7548344 CACAACCCGTT 7548334 >seq7767 Length=50048226 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| |||||| |||||||||| || |||| ||| Sbjct 16036438 CCCTCATCTCTGCTAATAAGTTCATTGGAAAACATGGGGCCAGGCATCAGGTCACGTTTC 16036379 Query 74829 TTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | ||| || || | | || || |||||| |||||||| ||||| ||| ||||| Sbjct 16036378 TTGAGCCAGAATATCGTCGCA-AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAA 16036320 Query 74888 GGCGACAAGGCGTT 74901 | | |||| |||| Sbjct 16036319 GTCCACAACCCGTT 16036306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547162153945600