Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9 105 4e-18 seq7857 87.8 1e-12 >seq9 Length=2205763 Score = 105 bits (116), Expect = 4e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || ||| ||| || || || ||||| ||||| || || || Sbjct 1749334 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 1749393 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| || ||||| | | |||||| ||||| ||||| | |||||| Sbjct 1749394 CCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 1749453 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTCCACTTCCACG 34665 |||||| ||| ||| | ||| || | ||| |||| || |||| ||| || | | Sbjct 1749454 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACACCTCAAGG 1749512 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || | || |||||||| |||||||| Sbjct 1749513 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1749553 >seq7857 Length=43258702 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || ||| |||| || || || ||| || || ||||||||||| || Sbjct 31543672 GCCACCTCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGA 31543731 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 31543732 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGG 31543791 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| || ||| |||||| || | | || |||| | |||||| Sbjct 31543792 GATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGATGTCACTGGGCTCCAC 31543851 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| || || || || ||||||| || ||||| || |||||||| |||| Sbjct 31543852 CTCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTGA 31543904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314699404842176