Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq7823 102 7e-17 seq7828 91.5 1e-13 seq7865 87.8 2e-12 seq7857 86.0 5e-12 seq7767 86.0 5e-12 >seq9 Length=2205763 Score = 114 bits (126), Expect = 1e-20 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTG--GAACCGT 27045 |||||||| ||||| || || ||||| |||||| | || || ||||| ||| || || Sbjct 1749553 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGTCGAGCCCA 1749494 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| | ||||||| |||||| ||||| |||||||| || ||||| || || || | Sbjct 1749493 GTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACC 1749434 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | | | || |||||||| ||||||| | || | || || || | Sbjct 1749433 AGCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATA 1749374 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || || || ||||| ||| | || ||||| | || | ||||||||||| Sbjct 1749373 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTACGGGGTGGCAT 1749322 >seq7823 Length=12955506 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 3355325 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 3355384 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || ||||| ||||| ||||| || || || || Sbjct 3355385 TGACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCA 3355444 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 3355445 GCAGAGGCTCATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 3355504 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || ||||| || | || ||||| | ||| || |||||||| Sbjct 3355505 CATCCAGAAAGAGTCAACTCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 3355553 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 |||||| | || || || || ||||| || ||| | || || | || || || Sbjct 3355125 GGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAG 3355184 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || ||||| ||||| ||||| || || || || ||| | | || | || ||||| || Sbjct 3355185 ATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAG 3355244 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 ||||||| | || |||| ||||||||||| || || ||||||||| | || || Sbjct 3355245 CTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTG 3355304 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || |||| || |||||||||| Sbjct 3355305 GTCCTGCGCCTGAGGGGTGGCAT 3355327 >seq7828 Length=21597463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || ||||| || || ||||| || Sbjct 14213586 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 14213527 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | | || || ||||| | || ||||| || || || ||||| Sbjct 14213526 GATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAG 14213467 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | | || | || ||||| ||| ||||||| | || || || || || ||||| Sbjct 14213466 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGA-CGTCCTTTGTCTGACTACAA 14213408 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||||||||||||| || | ||| | || ||| Sbjct 14213407 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 14213374 >seq7865 Length=68117122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| | ||| |||| ||||| |||| ||||| || |||||||| Sbjct 16996458 ATGCAGATGTTTGTGAGGACT--GACCAGCAAGACTATCACTCTAGAGGTGGAACCCATT 16996515 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCA-TACCACCCGATCA 27106 ||| | || ||| || || || || ||||| |||||||||| |||| | || || Sbjct 16996516 GACACCATCAAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGCAGTACCCTCTGACCA 16996575 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 16996576 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCTCACT-TTTCTGATTACAA 16996634 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || | ||| || | || ||||| | | | || |||||||| Sbjct 16996635 CATCCAGAAAGGGTCCACTCTGCACCTGGTTCTCCATCTGAGGGGTGGC 16996683 >seq7857 Length=43258702 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||||| | || ||| | || ||||| || | ||||| || Sbjct 24177955 ATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTCG 24178014 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || | | || || || ||||| || || ||||| || || || ||||| Sbjct 24178015 GATACAATACAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 24178074 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| ||| ||||||| | || | || || |||||| Sbjct 24178075 CAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTACAAC 24178134 Query 27168 ATTCAAAAGGAGTCGAC 27184 | |||||||||||| || Sbjct 24178135 ACTCAAAAGGAGTCCAC 24178151 >seq7767 Length=50048226 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || || || || Sbjct 33066956 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGATCCCTCG 33066897 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||| || || ||||| || || || ||||| Sbjct 33066896 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 33066837 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| ||||||| | || | || || |||||| Sbjct 33066836 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTACAAC 33066777 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||||||||| || Sbjct 33066776 ATTCAAAAGGAGTCTAC 33066760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434875604029440