Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq7816 188 6e-43
seq7820 179 3e-40
seq7825 172 5e-38
seq7771 118 9e-22
>seq7816
Length=41823926
Score = 188 bits (208), Expect = 6e-43
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||| ||| | || || |||||||||||||||| |||
Sbjct 30774478 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTTAGCCCAGAAAACATGGTCACC 30774419
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || || |||| |||||||| || ||||| || || ||||| || || ||||| ||
Sbjct 30774418 TTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAAGACAAGATAAACATCACC 30774359
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
|||| | ||| | ||| |||| || |||||||||||||| || |||| |||||||||
Sbjct 30774358 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 30774299
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509
|| |||||||| | || || |||||||| ||||||||||| |||||||
Sbjct 30774298 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAA 30774250
>seq7820
Length=31847680
Score = 179 bits (198), Expect = 3e-40
Identities = 370/546 (68%), Gaps = 7/546 (1%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || | ||||| || | || | |||||| || || || || | ||||
Sbjct 25919817 CTAAACTGCATCACCGCTGTGTCCCAGAACACGGGCATCGGCAAGAACGGGGACTTGCCC 25919876
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259
||||| || || | |||||||| | ||| |||| |||||| | | ||| | |
Sbjct 25919877 TGGCCCCCGCTCAGGAATGAATTCATGTTTTTCCAAAGAATGACCACAACCTCCTCAGTA 25919936
Query 2260 TTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA- 2315
| ||||||||| | || |||||||| || |||| |||||| || ||||| ||
Sbjct 25919937 GAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGATATGGTTCTCTATTCCCGAGAAG 25919996
Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375
|| || ||||| || ||||||| ||| | |||||||| ||| |||| || || || ||
Sbjct 25919997 AATCAA-CCTTTAAAGGACAGAATTAATTTAGTTCTCAGCAGAGACCTCAAGGAACCTCC 25920055
Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACC 2435
|| || |||| ||| |||| |||||| | ||| | || | || |||| | |
Sbjct 25920056 ACAAGGAGCTCCTTTTCTTGCCAAAAGTCTGGATGATGCATTAAAATTTATTGAGCAATC 25920115
Query 2436 AGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495
||||||| | ||| ||||| | | |||||||| || || || ||||| || ||||
Sbjct 25920116 AGAATTAGCAAACAAAGTGGACATGGTTTGGATAGCGGGAGGCAGTTCTGTTCATAAGGA 25920175
Query 2496 GAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555
||| | | | | || | | | || ||| | ||||||||| |||| |||||||
Sbjct 25920176 AGCCATGAACAAACCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCAGGAATTTGA 25920235
Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615
| || | || || | ||||||| || | ||| | ||| || | |||| | |
Sbjct 25920236 AAGTAACGTATTTTTTCAAGAAATTGATTTGGAGAAAAA--AACTTCTGCCAGAATATGC 25920293
Query 2616 AGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGa 2675
|||||||| |||| | | || || || || || |||| ||||||||||| |||||||
Sbjct 25920294 AGGTGTTCTTTCTGACATCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGA 25920353
Query 2676 aaaaaa 2681
|| ||
Sbjct 25920354 GAAGAA 25920359
>seq7825
Length=26217151
Score = 172 bits (190), Expect = 5e-38
Identities = 369/544 (68%), Gaps = 17/544 (3%)
Strand=Plus/Minus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || ||||| ||| | || | |||||| | || || || | ||||
Sbjct 25204221 CTAAACTGCATCCTCGCTGTGTCTAAGAACAGGGGCATCAGCAAGAATGGGGACCTGCTG 25204162
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259
||||| | | | ||||| || || |||| | || |||||| | || ||| | ||
Sbjct 25204161 TGGCCCTCATTCAGGAATGAGTTCAAGTATTTCCGAAGAATGACCACATCCTCCTCAGAA 25204102
Query 2260 TTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGC 2319
||||||||| | || |||||||| || ||||||||||| || ||||| || |
Sbjct 25204101 GGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCGAGAAGAAT 25204042
Query 2320 AGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGT 2379
| ||||| || ||||||| || | || ||| ||| ||||| | ||||| ||||
Sbjct 25204041 CGACCTTTAAAGGACAGAATTGATTTAGTGCTC---AGAGACCTTGAGGAGCCCCCAC-A 25203986
Query 2380 GGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAA 2439
| ||||| ||| |||| |||||| | ||| | || || ||| | | || |||||||
Sbjct 25203985 GAAGCTCATTTTCTTGCCAAAAGTCTGGATGATGC-CTTAAAAGTTTTTGAGCACCAGAA 25203927
Query 2440 TTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC 2499
||| | | | ||||| | | |||||||| | || | || ||||| ||| |||| |
Sbjct 25203926 TTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGTCAGTTCTGTTTATAAGGAAGCC 25203867
Query 2500 AT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558
|| ||||| | || | | || ||| | ||||||| | |||| |||||||| |
Sbjct 25203866 ATGAACAAG-CCAGGCCACGTTAAACTATTTGTGACAAGGAATGTGCAGGAATTTGAAAG 25203808
Query 2559 TGATAC-ATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617
||| || | || |||||||||||| | |||| || ||||| | ||||
Sbjct 25203807 TGACACGTTTTTTTCCAGAAATTAATTTGGAGAAAT---AAAAACTT------CTCCCAG 25203757
Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677
|||||| |||| || || || || | || |||| |||||||||||| ||||||| |
Sbjct 25203756 GTGTTCTTTCTGATGTCCAGGAGGAGGAAGGCATTAAATACAAATTTGAAGTATATGAGA 25203697
Query 2678 aaaa 2681
| ||
Sbjct 25203696 AGAA 25203693
>seq7771
Length=57971676
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||||||||||||| | || || || |||||||||
Sbjct 44740626 GTGGTGGAGGAGCTCTTCAGGGATGGGGTAAACTGGGGGAGGATCGTGGCCTTCTTTGAG 44740567
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 44740566 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 44740507
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| || ||||||||| ||
Sbjct 44740506 ATCGCTCTGTGGATGACTGA 44740487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414437035095808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |