Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq7816 188 6e-43 seq7820 179 3e-40 seq7825 172 5e-38 seq7771 118 9e-22 >seq7816 Length=41823926 Score = 188 bits (208), Expect = 6e-43 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || || |||||||||||||||| ||| Sbjct 30774478 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTTAGCCCAGAAAACATGGTCACC 30774419 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || ||||| || || ||||| || Sbjct 30774418 TTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAAGACAAGATAAACATCACC 30774359 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || |||||||||||||| || |||| ||||||||| Sbjct 30774358 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 30774299 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 || |||||||| | || || |||||||| ||||||||||| ||||||| Sbjct 30774298 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAA 30774250 >seq7820 Length=31847680 Score = 179 bits (198), Expect = 3e-40 Identities = 370/546 (68%), Gaps = 7/546 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || | |||||| || || || || | |||| Sbjct 25919817 CTAAACTGCATCACCGCTGTGTCCCAGAACACGGGCATCGGCAAGAACGGGGACTTGCCC 25919876 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259 ||||| || || | |||||||| | ||| |||| |||||| | | ||| | | Sbjct 25919877 TGGCCCCCGCTCAGGAATGAATTCATGTTTTTCCAAAGAATGACCACAACCTCCTCAGTA 25919936 Query 2260 TTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA- 2315 | ||||||||| | || |||||||| || |||| |||||| || ||||| || Sbjct 25919937 GAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGATATGGTTCTCTATTCCCGAGAAG 25919996 Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375 || || ||||| || ||||||| ||| | |||||||| ||| |||| || || || || Sbjct 25919997 AATCAA-CCTTTAAAGGACAGAATTAATTTAGTTCTCAGCAGAGACCTCAAGGAACCTCC 25920055 Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACC 2435 || || |||| ||| |||| |||||| | ||| | || | || |||| | | Sbjct 25920056 ACAAGGAGCTCCTTTTCTTGCCAAAAGTCTGGATGATGCATTAAAATTTATTGAGCAATC 25920115 Query 2436 AGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 ||||||| | ||| ||||| | | |||||||| || || || ||||| || |||| Sbjct 25920116 AGAATTAGCAAACAAAGTGGACATGGTTTGGATAGCGGGAGGCAGTTCTGTTCATAAGGA 25920175 Query 2496 GAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555 ||| | | | | || | | | || ||| | ||||||||| |||| ||||||| Sbjct 25920176 AGCCATGAACAAACCAGGCCATCTTAGACTATTTGTGACAAGGATTATGCAGGAATTTGA 25920235 Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615 | || | || || | ||||||| || | ||| | ||| || | |||| | | Sbjct 25920236 AAGTAACGTATTTTTTCAAGAAATTGATTTGGAGAAAAA--AACTTCTGCCAGAATATGC 25920293 Query 2616 AGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGa 2675 |||||||| |||| | | || || || || || |||| ||||||||||| ||||||| Sbjct 25920294 AGGTGTTCTTTCTGACATCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGA 25920353 Query 2676 aaaaaa 2681 || || Sbjct 25920354 GAAGAA 25920359 >seq7825 Length=26217151 Score = 172 bits (190), Expect = 5e-38 Identities = 369/544 (68%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || ||||| ||| | || | |||||| | || || || | |||| Sbjct 25204221 CTAAACTGCATCCTCGCTGTGTCTAAGAACAGGGGCATCAGCAAGAATGGGGACCTGCTG 25204162 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259 ||||| | | | ||||| || || |||| | || |||||| | || ||| | || Sbjct 25204161 TGGCCCTCATTCAGGAATGAGTTCAAGTATTTCCGAAGAATGACCACATCCTCCTCAGAA 25204102 Query 2260 TTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGC 2319 ||||||||| | || |||||||| || ||||||||||| || ||||| || | Sbjct 25204101 GGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCGAGAAGAAT 25204042 Query 2320 AGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGT 2379 | ||||| || ||||||| || | || ||| ||| ||||| | ||||| |||| Sbjct 25204041 CGACCTTTAAAGGACAGAATTGATTTAGTGCTC---AGAGACCTTGAGGAGCCCCCAC-A 25203986 Query 2380 GGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAA 2439 | ||||| ||| |||| |||||| | ||| | || || ||| | | || ||||||| Sbjct 25203985 GAAGCTCATTTTCTTGCCAAAAGTCTGGATGATGC-CTTAAAAGTTTTTGAGCACCAGAA 25203927 Query 2440 TTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC 2499 ||| | | | ||||| | | |||||||| | || | || ||||| ||| |||| | Sbjct 25203926 TTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGTCAGTTCTGTTTATAAGGAAGCC 25203867 Query 2500 AT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558 || ||||| | || | | || ||| | ||||||| | |||| |||||||| | Sbjct 25203866 ATGAACAAG-CCAGGCCACGTTAAACTATTTGTGACAAGGAATGTGCAGGAATTTGAAAG 25203808 Query 2559 TGATAC-ATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617 ||| || | || |||||||||||| | |||| || ||||| | |||| Sbjct 25203807 TGACACGTTTTTTTCCAGAAATTAATTTGGAGAAAT---AAAAACTT------CTCCCAG 25203757 Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677 |||||| |||| || || || || | || |||| |||||||||||| ||||||| | Sbjct 25203756 GTGTTCTTTCTGATGTCCAGGAGGAGGAAGGCATTAAATACAAATTTGAAGTATATGAGA 25203697 Query 2678 aaaa 2681 | || Sbjct 25203696 AGAA 25203693 >seq7771 Length=57971676 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||||||||||||| | || || || ||||||||| Sbjct 44740626 GTGGTGGAGGAGCTCTTCAGGGATGGGGTAAACTGGGGGAGGATCGTGGCCTTCTTTGAG 44740567 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 44740566 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 44740507 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 44740506 ATCGCTCTGTGGATGACTGA 44740487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414437035095808