Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq7846 109 5e-19 seq7782 96.9 3e-15 seq7828 82.4 7e-11 >seq9 Length=2205763 Score = 123 bits (136), Expect = 2e-23 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || | || ||| | |||||| || || ||| |||||| || |||||||| || | Sbjct 1749324 GCCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGA 1749383 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || | || || ||||||||||||||||| | |||||||||||||| | || Sbjct 1749384 CAGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGG 1749443 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC--C 39234 | || ||| ||||| |||||| ||||| || | | || || || | ||| | Sbjct 1749444 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1749503 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || | ||||| | || |||||||| || || |||||||| ||||||| Sbjct 1749504 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 1749555 >seq7846 Length=12828309 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || ||||| | ||||| || || ||| ||| || || || || || || | Sbjct 9163009 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAC 9163068 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || |||||||| || ||||| || | | ||||||||||| ||| Sbjct 9163069 AGGGTGCGCCCGTCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9163128 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||||||||| ||| ||| |||| || | | || || || | |||||| Sbjct 9163129 ATGCCCTCTTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 9163188 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || |||| || || || ||||| |||||| Sbjct 9163189 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATC 9163236 >seq7782 Length=35566003 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| | || ||| |||| | | |||| ||| || | || || || | | || Sbjct 14262502 CACCAAGAGCAGGGTGGACTCTCT--GGATATGATAGTCTGACAGAGTACGGCCAGCTTC 14262559 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||||||||| || |||||||||||||| | || | | ||| ||||| Sbjct 14262560 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 14262619 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || || || | ||| || || | ||||| | || Sbjct 14262620 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 14262679 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||||||| || || |||||||| ||||||| Sbjct 14262680 GCCCGTCAGGGTCTTCACAAAGATCTGCATCT 14262711 >seq7828 Length=21597463 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || |||||||| || | || || | | || || Sbjct 10995418 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTC 10995359 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||| |||||||||||| | |||| ||||||||| | || | || ||| | ||| Sbjct 10995358 TAGCTATTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTG 10995299 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | || || || | ||| || | || ||||| | || Sbjct 10995298 GATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCT-CAGGGTGATGGTCTT 10995240 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || | || |||||||| ||||||| Sbjct 10995239 GCCTGTGAGGGCCTTCACAAAGATCTGCATCT 10995208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429504389395136