Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7767 131 1e-25 seq7828 127 1e-24 seq7857 123 2e-23 seq7858 102 6e-17 seq7764 102 6e-17 seq9 89.7 3e-13 seq7823 86.0 4e-12 >seq7767 Length=50048226 Score = 131 bits (144), Expect = 1e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 33066959 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGATCCC 33066900 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || ||| || || ||||| | || || ||| Sbjct 33066899 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 33066840 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||||||||| || ||| Sbjct 33066839 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 33066780 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| ||||| || Sbjct 33066779 AACATTCAAAAGGAGTCTAC 33066760 >seq7828 Length=21597463 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| ||||| || Sbjct 14213589 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 14213530 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || ||| | || ||||| | || || ||| Sbjct 14213529 TCGGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 14213470 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||| |||| || ||| Sbjct 14213469 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTCCTTTGTCTGACTAC 14213410 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||||||| | ||| | || || || Sbjct 14213409 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 14213372 >seq7857 Length=43258702 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| || | ||| || || ||||||||||| | ||| || Sbjct 24177952 AAGATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCC 24178011 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | ||| |||| || ||| || || ||||| | || || ||| Sbjct 24178012 TCGGATACAATACAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 24178071 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || ||||| ||||| ||||||||||| | ||||||| | || ||| Sbjct 24178072 CAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTAC 24178131 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| |||||||| | ||| | || ||||| Sbjct 24178132 AACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAG 24178169 >seq7858 Length=29646629 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||||||| | |||||||||||||| || || ||||| ||||| ||| || ||| Sbjct 12424960 TGCAGATTTTCCTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGCCTGAACCCTCGG 12424901 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 | || | |||| || | || ||| || || ||||| | || || ||||| | Sbjct 12424900 ATACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGC 12424841 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 || | | || |||| ||||| ||||||||| | | | ||||||| || ||||||| Sbjct 12424840 AGAGACTGATCGTTGCTGGCAAGCAACTGGAAAATGGATGCACTTTGTCTGACTACAACA 12424781 Query 23792 TACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||||| ||||| || | ||| | || || || Sbjct 12424780 TTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 12424747 >seq7764 Length=47977530 Score = 102 bits (112), Expect = 6e-17 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| | ||| || || ||||||||||| ||||| ||| Sbjct 26988426 AAGATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAATCC 26988367 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | | || || |||| |||| || || || || ||||| | || || ||| Sbjct 26988366 TCAGGTACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 26988307 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || || | ||||| |||||||||||| || ||||| | || ||| Sbjct 26988306 CAGCA--GACTGATCTTCACTGGCAAGCAACTGGAAGACAGACAAACTTTGTGTGACTAC 26988249 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||| ||||| |||||||| | ||| | || || || Sbjct 26988248 AGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 26988211 >seq9 Length=2205763 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT--GACTCCA 23668 |||||||| || || || ||||| ||||| || || ||||| || || || || ||| Sbjct 1749553 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGTCGAGCCCA 1749494 Query 23669 CGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||| |||| ||| | ||| | |||| | ||||| || || | ||||| || Sbjct 1749493 GTGACACCATTGAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGCATCCCGCCTGAC 1749435 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | | ||||| |||||||| |||||||| | || ||| | || || Sbjct 1749434 CAGCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTAT 1749375 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || || ||||||||||| Sbjct 1749374 AATATCCAGAAAGAGTCCAC 1749355 >seq7823 Length=12955506 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 3355326 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3355385 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || ||||| || | || || || || Sbjct 3355386 GACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 3355445 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | |||||| | ||||||||| Sbjct 3355446 CAGAGGCTCATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3355505 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 3355506 ATCCAGAAAGAGTCAAC 3355522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337977171358976