Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq7759 163 4e-35 seq7806 134 2e-26 >seq7759 Length=36627259 Score = 163 bits (180), Expect = 4e-35 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| | |||||||| || |||| ||| ||| |||||||| || ||||| || Sbjct 19738515 ATGAGTCTGCTCGTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGC 19738574 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || ||||||||||||| ||||| || |||||||||||||| || ||||| Sbjct 19738575 ACATCACAGACTCTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGC 19738634 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| || || | || || || ||||| | || | || ||| || | | ||| || Sbjct 19738635 ACCAGCCCGAAGACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAATATGGGGTGGG 19738694 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||||| |||||||| | ||| ||||||| || || ||||| | | Sbjct 19738695 TAGATCATCTCCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACC 19738754 Query 9484 TGA 9486 ||| Sbjct 19738755 TGA 19738757 Score = 161 bits (178), Expect = 1e-34 Identities = 218/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | |||||| | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 19736886 GAACACTGAACGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 19736945 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 19736946 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 19737005 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || |||||| || |||| || ||||| | |||||| || || |||| || | Sbjct 19737006 CAGGTGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCCATTTCTA 19737065 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | ||||| |||||||| | || || ||| |||| Sbjct 19737066 CCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTAGCAGGAGGGCGGGATACA 19737125 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 | |||| || || | || || ||||||||| | | ||||| || ||||| |||| Sbjct 19737126 GTTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTC 19737185 Query 8583 CTGT 8586 |||| Sbjct 19737186 CTGT 19737189 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 19739569 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 19739628 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 19739629 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 19739688 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 19739689 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCGGGAAGCTC 19739748 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 19739749 TTTCTTGCCTGAAAAATGAGAA 19739770 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || |||||||| || | || || || || ||| || | Sbjct 19740180 TCACCTTTCACACCCATGGGTGTTGGACAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 19740239 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||||||| || || |||||||||||| || | |||||| | ||||| | Sbjct 19740240 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 19740299 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| || || |||| Sbjct 19740300 GGTGGACTCTCAATCAAATGTGACCTGGCTGA 19740331 >seq7806 Length=37070314 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || ||||| ||||| |||||||||||| | || | Sbjct 10371793 TCTTGACCATATTGAAACCCATCTCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAG 10371852 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 10371853 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 10371912 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| |||| | | || | ||| | ||||| Sbjct 10371913 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGTAGAACTCCA 10371972 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| || ||| || || || | ||||| ||||||||||| || |||| Sbjct 10371973 AGGCATCGATGTGTCCATACAGCTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCTG 10372029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716806259322880