Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017- 06-20] 7,872 sequences; 2,400,917,536 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7846 129 5e-25 seq7823 107 2e-18 seq7857 98.7 9e-16 seq7858 84.2 2e-11 >seq7846 Length=12828309 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| |||| || Sbjct 9163027 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCCTCC 9163086 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || ||||| || |||| | ||| ||||| | ||| | || ||| |||||| | Sbjct 9163087 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGG 9163146 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 9163147 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 9163206 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| |||||||| Sbjct 9163207 CCGGTCAAGGTCTTCACGAAGATCTGCAT 9163235 >seq7823 Length=12955506 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| || || || ||| ||||| ||||| || || Sbjct 3355556 ACAGCCACCCCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATC 3355497 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 3355496 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGG 3355437 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||| | || ||| || || ||| || |||| ||| | | ||||| || | || Sbjct 3355436 GGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC-ACGTTTTCGATGGTGTCACTGGGCT 3355378 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 3355377 CCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 3355325 >seq7857 Length=43258702 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| |||||||| || || || ||||| | || || Sbjct 31543691 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCC 31543750 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | ||| | || ||| || || | Sbjct 31543751 AGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 31543810 Query 41774 ATTTTTTGCTTCA-----ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 || || ||||| ||| || |||| || | ||||||||||| | || | Sbjct 31543811 ATCTTGGCCTTCACATTTTCGATGA-----TGTCACTGGGCTCCACCTCCAGGGGGATGG 31543865 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || || || ||||| ||||| |||||||| || Sbjct 31543866 TCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 31543902 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || ||| ||||| || || || || || || ||||| | || || Sbjct 31543463 ACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCC 31543522 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||| ||| || || || | ||| ||||| | ||| | || ||| || | | Sbjct 31543523 ATCTGCTTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGG 31543582 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||||||||| || || || || Sbjct 31543583 ATATTCGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 31543642 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||| ||||| ||||||||| Sbjct 31543643 CCGGTTAGGGTCTTCACGAAGATCTGCATG 31543672 >seq7858 Length=29646629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| || || || || ||||| | || || |||||||||| ||| || Sbjct 23743210 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAA 23743269 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG-TCCATGATTTTTTGCTTCAACG 41789 || || | || ||||| | ||| | || |||||| ||| ||| || ||||| Sbjct 23743270 GATGAGCCTCTCCTGGTCAGGGGGGATGCCCTCCTTTATCCTGGATCTTGGCCTTCACAT 23743329 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | ||||| || | ||||||||||| || || || || | ||||| ||||| | Sbjct 23743330 TTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCA 23743389 Query 41850 CGAAAATCTGCAT 41862 ||| |||||||| Sbjct 23743390 TGAAGATCTGCAT 23743402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462258509286400