Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neomonachus_20schauinslandi_20[genbank_20GCA_5F002201575.1_202017-
06-20] 7,872 sequences; 2,400,917,536 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7846 129 5e-25
seq7823 107 2e-18
seq7857 98.7 9e-16
seq7858 84.2 2e-11
>seq7846
Length=12828309
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||||| ||| ||||||||| ||||| ||||| || ||||||||| |||| ||
Sbjct 9163027 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGCCCGTCCTCC 9163086
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||| || ||||| || |||| | ||| ||||| | ||| | || ||| |||||| |
Sbjct 9163087 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCTTTGTCCTGG 9163146
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||| | | | ||||| || | ||||||||||| || || || |||
Sbjct 9163147 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 9163206
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| |||| ||||| ||||| ||||||||
Sbjct 9163207 CCGGTCAAGGTCTTCACGAAGATCTGCAT 9163235
>seq7823
Length=12955506
Score = 107 bits (118), Expect = 2e-18
Identities = 165/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | ||||| || || || ||| ||||| ||||| || ||
Sbjct 3355556 ACAGCCACCCCTCAGACGGAGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATC 3355497
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| | || || ||||||||||| || || || || | ||| ||||| |
Sbjct 3355496 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGG 3355437
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810
||| | || ||| || || ||| || |||| ||| | | ||||| || | ||
Sbjct 3355436 GGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC-ACGTTTTCGATGGTGTCACTGGGCT 3355378
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||||||| || || || || || ||||| ||||| ||||| |||||||||
Sbjct 3355377 CCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 3355325
>seq7857
Length=43258702
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/217 (70%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||| ||||| |||||||| || || || ||||| | || ||
Sbjct 31543691 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCATCTTCC 31543750
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || || || | ||| ||||| | ||| | || ||| || || |
Sbjct 31543751 AGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 31543810
Query 41774 ATTTTTTGCTTCA-----ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828
|| || ||||| ||| || |||| || | ||||||||||| | || |
Sbjct 31543811 ATCTTGGCCTTCACATTTTCGATGA-----TGTCACTGGGCTCCACCTCCAGGGGGATGG 31543865
Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
| || || || || ||||| ||||| |||||||| ||
Sbjct 31543866 TCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTT 31543902
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| || || || ||| ||||| || || || || || || ||||| | || ||
Sbjct 31543463 ACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCC 31543522
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| |||||||| ||| || || || | ||| ||||| | ||| | || ||| || | |
Sbjct 31543523 ATCTGCTTGCTGGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGG 31543582
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||||| | ||||| || | ||||||||||| || || || ||
Sbjct 31543583 ATATTCGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 31543642
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || ||||| ||||| |||||||||
Sbjct 31543643 CCGGTTAGGGTCTTCACGAAGATCTGCATG 31543672
>seq7858
Length=29646629
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/193 (70%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||| ||||| ||||| || || || || ||||| | || || |||||||||| ||| ||
Sbjct 23743210 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAA 23743269
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG-TCCATGATTTTTTGCTTCAACG 41789
|| || | || ||||| | ||| | || |||||| ||| ||| || |||||
Sbjct 23743270 GATGAGCCTCTCCTGGTCAGGGGGGATGCCCTCCTTTATCCTGGATCTTGGCCTTCACAT 23743329
Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| ||||| || | ||||||||||| || || || || | ||||| ||||| |
Sbjct 23743330 TTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCA 23743389
Query 41850 CGAAAATCTGCAT 41862
||| ||||||||
Sbjct 23743390 TGAAGATCTGCAT 23743402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462258509286400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |