Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq417 187 3e-42 seq148 87.8 2e-12 >seq417 Length=2207251 Score = 187 bits (206), Expect = 3e-42 Identities = 450/673 (67%), Gaps = 16/673 (2%) Strand=Plus/Plus Query 16667 CCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGAT 16726 ||||| || || || |||| || | || | || |||||||| || || || || || Sbjct 863671 CCCATCCTCTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAA 863730 Query 16727 ATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTT 16784 ||||||||||| | ||||| ||||| || ||||| || | | || || | Sbjct 863731 ATATTCTCCATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAA--AACCTAGCT 863788 Query 16785 CGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTC 16844 | || | || || || || || || ||||| || |||||| ||| ||||| | Sbjct 863789 CCAGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCC 863848 Query 16845 CTATAAGACGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC 16903 | || | || | | || | || ||| | | |||| |||||||| ||| || | Sbjct 863849 CAATGA-ACTTCATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCAT-- 863905 Query 16904 TTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 ||||||| | | |||| | |||||| ||| | || || ||||| |||||| Sbjct 863906 -TAATAATTATTTCCTTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATC 863964 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || || || ||||| ||||| |||||||| |||||||| || ||||| || Sbjct 863965 AGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 864024 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| | |||||||| | ||| ||||||| | || || ||||||||| Sbjct 864025 AGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAG 864084 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| | | | ||||| |||| || || ||||||| Sbjct 864085 AAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCC 864144 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | ||||| | |||| | || | | ||||| ||| ||| || || ||||| Sbjct 864145 CCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCG 864204 Query 17201 TT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 || | | || ||| |||| | | | | || | || || || || ||||| || || | Sbjct 864205 TTGAAGAGAAATTCCCTTTCTTCGGAA--TCTTTAATGTAAGTGTCAATGAGGAGACTAT 864262 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| || || || ||||| ||||||| || || || || || || || |||||||| | Sbjct 864263 ACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 864322 Query 17319 CTATTTGAACTTC 17331 || |||||||| Sbjct 864323 TAATCTGAACTTC 864335 >seq148 Length=4816872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || ||||| || | || |||||| || ||||||| Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 17106 C 17106 | Sbjct 2362269 C 2362269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517520414937240