Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1020 266 3e-66 seq417 174 2e-38 seq158 111 2e-19 seq148 98.7 1e-15 >seq1020 Length=850931 Score = 266 bits (294), Expect = 3e-66 Identities = 570/846 (67%), Gaps = 8/846 (1%) Strand=Plus/Minus Query 15941 AAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTG 15998 |||||||| || || || | || ||||| |||||||| ||||| ||||| || ||| Sbjct 339020 AAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTG 338961 Query 15999 AAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATT 16058 |||| ||| | || || ||| | | || ||||| || || || ||||| | Sbjct 338960 AAAAC--CTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACT 338903 Query 16059 GACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATT 16118 | |||||| |||||| || || || || || || | || | || | || | Sbjct 338902 GCTTCATTAATGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCCGTGAGGAACT 338843 Query 16119 GTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTAT 16178 || |||||| ||| || | |||| || || | ||| || || ||| | | Sbjct 338842 CCTGCTCTATCCGAACGGCATTAATAATTATTTCCTTCACTCTCTGCTCGGAAGGTTTGT 338783 Query 16179 GGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGA 16238 || |||||||| ||||| || || || ||||| || |||| || || |||||||| Sbjct 338782 GGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAG 338723 Query 16239 TAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCG 16298 ||||||| |||||||| | | || ||||| || |||||||| | ||||||||||| Sbjct 338722 TAAGTTCATTGGAAAAGGCGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATATCG 338663 Query 16299 CAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCG 16358 ||||| || || ||||||| || || || |||| |||||||| | | |||||| Sbjct 338662 ATGCAAAAGAACCAGAAAAGAGGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTTCCC 338603 Query 16359 CGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATAC 16418 |||| ||| | ||||| | | | |||| | | |||| || || || | |||| || Sbjct 338602 CGTAGGTACCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACAC 338543 Query 16419 AATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATA 16476 || ||| || || ||||| || | | || ||| |||| | || ||| | ||||| Sbjct 338542 AAGGCATTGTCTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTGGA--ATCTTTAATATA 338485 Query 16477 CGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCC 16536 || ||| | || | ||||||||| || || || ||||| || ||||| | || || | Sbjct 338484 AGTGTCAGTGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAAATTGGAAGTC 338425 Query 16537 ATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTC 16596 |||||| || || || || | || || ||||| | ||| || ||| ||| ||| || Sbjct 338424 ATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTC 338365 Query 16597 ATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTC 16656 ||| ||||| || ||||| || ||||| || |||| | ||| || || ||| | || Sbjct 338364 ATTTACGATGCCATCACTCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTC 338305 Query 16657 GTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGT 16716 |||| | || | ||| | | | || ||||| | |||||| | ||| | || Sbjct 338304 CTCAGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGATCCACCTTTTCAGCTGT 338245 Query 16717 CCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 ||||||| |||| | || || |||||| | | |||||||||| ||| | ||||| || Sbjct 338244 CCAAAAGGAAGCCTCAGCTTTCTTATACCTCTGCCAAATATCACAGTACTCGATGGGGAA 338185 Query 16777 TACGAC 16782 | ||| Sbjct 338184 GATGAC 338179 >seq417 Length=2207251 Score = 174 bits (192), Expect = 2e-38 Identities = 440/667 (66%), Gaps = 4/667 (1%) Strand=Plus/Plus Query 15905 CCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGAT 15964 ||||| || || || || | || | || | ||||||||||| || || || | || Sbjct 863671 CCCATCCTCTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAA 863730 Query 15965 ATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCC 16024 ||||| |||||| | ||||| ||||| || || | ||| | || || ||| Sbjct 863731 ATATTCTCCATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTCC 863790 Query 16025 GTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCT 16084 | | || ||||| || || || ||||| || |||||| |||||| || || Sbjct 863791 AGCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCA 863850 Query 16085 ATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTA 16144 || | | || | || | | | ||| || |||||| ||| || | || Sbjct 863851 ATGAACTTCATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCATTAATA 863910 Query 16145 ATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 || || || | ||| || || ||| | ||| |||||||| ||||| || || Sbjct 863911 ATTATTTCCTTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAG 863970 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || ||||| || |||| || || |||||||| |||||||| |||||||| || | || Sbjct 863971 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCA 864030 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 ||||| | |||||||| | ||||||||||| |||| || || |||||||| || Sbjct 864031 GGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATT 864090 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384 || || |||| ||||| | | | |||||| |||| ||||| ||||| | | ||| Sbjct 864091 CCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATC 864150 Query 16385 CATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AA 16442 || | |||| | || | | |||| |||| ||| || || ||||| || | Sbjct 864151 CAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAAG 864210 Query 16443 ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 | || ||| |||| | | || ||| | || || || ||||| || | ||| ||||| | Sbjct 864211 AGAAATTCCCTTTCTTCGGA--ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCT 864268 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | || || ||||| || |||| || || || |||||||| || || || || | || | Sbjct 864269 CAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCT 864328 Query 16563 GTACTTC 16569 | ||||| Sbjct 864329 GAACTTC 864335 >seq158 Length=7371824 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| |||||||| || | || ||||| |||| ||||| Sbjct 3463988 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 3463929 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||||| Sbjct 3463928 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 3463869 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 3463868 CCACAACTCTTTCC 3463855 >seq148 Length=4816872 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| || |||||||| Sbjct 2362151 TCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 2362210 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || |||| |||||||| Sbjct 2362211 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 2362269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511389513296760