Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq698 450 1e-121 seq393 405 4e-108 seq12 264 8e-66 seq1040 194 1e-44 seq259 129 4e-25 seq537 91.5 1e-13 >seq698 Length=2098425 Score = 450 bits (498), Expect = 1e-121 Identities = 433/553 (78%), Gaps = 3/553 (1%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||||||||||||||||||||||||||||||| | |||||| || || |||| Sbjct 804006 ATTAATCATTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 804065 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 ||||||||||| ||| |||||| || || ||||| ||||| | ||||| |||| ||| Sbjct 804066 CAGAAAGAACACCTGGGTATTCTGGCAGAATTTTGT--TTCTCCAAATCAATTTCTTGAA 804123 Query 4088 AAAAGG-TGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| |||||| ||||| || ||| | ||||| |||||||| ||| |||||| || | Sbjct 804124 AAAAAAATGTCACTTTCAAGTTCCTGCGTAATCCTTGTCACAAATAGTCTAAGATGGCCT 804183 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | |||| ||||| |||| |||||||| ||||| |||||| |||||||| ||| Sbjct 804184 GGCTTGTTCATGGCTTCCTTATGAACAGAACTGCCTCCCGCTATCCAAACCATGTCCACT 804243 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||||||||||||||| || || ||| |||||| |||||||| | ||| || || | | Sbjct 804244 TTATTTGCTAATTCTGATTGCTCAATAAATTTTAAGGCATCATCCAGACTTTTGGCAAGA 804303 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| |||||| | ||||| || || |||||||||| | || ||||||| | Sbjct 804304 AAATGAGCTCCTTGTGGAGGTTCCTTGAGGTCTCTGCTGAGAACTAAATGAATTCTGTCC 804363 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 ||||||| | ||||||| ||||| |||||||| ||||| ||||||||||||| ||| Sbjct 804364 TTTAAAGATTGATTCTTCTTGGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAA 804423 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || ||| || || || || ||||||||||||||| || | |||||| Sbjct 804424 TTCTGTTTACCTTCTACTGATGAGGTTGTGGTCATTCTTTGGAAAAACTTGCATTCATTC 804483 Query 4447 ATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCA 4506 | || ||||| ||||||| || | |||||||||||||| || | | |||| Sbjct 804484 CTGAGCGGGGGCCAGGGCAAGTCCCCGTTCTTGCCAATGCCCATATTCCGGGACGCAGCG 804543 Query 4507 ACAATGCAGTTTA 4519 | |||||||||| Sbjct 804544 GCGATGCAGTTTA 804556 >seq393 Length=1466730 Score = 405 bits (448), Expect = 4e-108 Identities = 430/566 (76%), Gaps = 16/566 (3%) Strand=Plus/Plus Query 3957 AAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTC 4016 || || || | ||| || ||||||||||||||||||||||||||| ||||| | || ||| Sbjct 306549 AACACCTTCGCATTCATCATTCTTCTCATATACTTCAAATTTGTATTTAATGCCTTCCTC 306608 Query 4017 TTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATC 4076 || || |||| ||||||||||| ||| | |||||| |||||||| | || Sbjct 306609 CTCCTGGACATCAGAAAGAACACCTGGG---------AGAAGTTTTTATTTCTCCAAATT 306659 Query 4077 AAATTCTGGAAAAAAG--GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 || |||||||||||| ||||||| |||||| || |||| ||||| |||||||| ||| Sbjct 306660 AATTTCTGGAAAAAAAACGTGTCACTTTCAAATTCCTGCACAATCCTTGTCACAAATAGT 306719 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||| | || ||| | |||| ||||| ||||| |||||||| |||| | |||||| Sbjct 306720 CTAAGGTGGCCTGGCTTGTTCATGGCTTCCTTATAAACAGAACTGACTCCCACTATCCAA 306779 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| |||||||||||||||||||| | || || |||||| |||||||| | | Sbjct 306780 ACCATGTCCACTTTATTTGCTAATTCTGGTGGCTCAAAAACTTTTAAGGCATCATCCAGA 306839 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || || | |||||||||| || || | |||| || || ||||| || | | Sbjct 306840 CTTTTGGCAAGAAAATGAGCTTCGTGGGG--GTTCCTCAAGGTCT---CTGAGCACTAAA 306894 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 | ||||||| | |||||||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 306895 TCAATTCTGTCCTTTAAAGGTCGATTCTTCTCGGGAATAGAGAACCATGTCTTCCTACCC 306954 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| |||||||||||| || ||| || || | || |||||||||||||||| Sbjct 306955 ATAATCACCAAATTCTGTTTACCTTCTACTGAGGAGGATGTGGTCATTCTTTGGAAATAC 307014 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 || || |||||| | | | ||||| |||| || || | |||| |||||| |||| Sbjct 307015 TTGAACTCATTCCTGAATGAGGGCCACGGCACGTCCCCGTTCTTGCTGATGCCCCTGTTC 307074 Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520 |||| ||||| | ||||| ||||| Sbjct 307075 TGAGACACAGCGAGGATGCAATTTAG 307100 >seq12 Length=8214359 Score = 264 bits (292), Expect = 8e-66 Identities = 382/544 (70%), Gaps = 34/544 (6%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || || ||| |||||| | |||||||||||||| |||||||| | ||| Sbjct 5092214 AAAACACCTTCACATGAATCATTCTTTTTGTATACTTCAAATTTCTACTTAATGCCTTTT 5092273 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || ||| ||||||||||||||| |||||| | ||| || ||| || | | | Sbjct 5092274 TCCTCCTGGACACCAGAAAGAACACTTGGGTATTCTGGAAGAAGCTTATATATCCCCAAA 5092333 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| |||| || ||||||| ||| Sbjct 5092334 TCAATTTCTGGAAAAAATGTGTTACTTTCAAAG------------------------AGT 5092369 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 || |||| || ||| | | | ||||| ||||| |||||||| ||||| | |||||| Sbjct 5092370 TTGAGATGGCTTGGCTTGTTTGTGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAA 5092429 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 ||||||||||| || |||| ||||||||| |||| |||||||||| ||||||| | | Sbjct 5092430 ACCATGTCTACCTTCTTTGTTAATTCTGGTTGTTTAATAAGTTTTAAGGCATCATGCAGA 5092489 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || |||| ||||||||| | | |||| | ||||| |||| | |||||||| Sbjct 5092490 CTTTTGGCTAGAAAATGAGCGCCTTTTGGAGGTTCCTTGAGTTGTCTACTGAGAACTGAG 5092549 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | | ||||| | |||||||| |||| |||| || || || ||||| Sbjct 5092550 TTAATTCTGTCCTCCAAAGGTCTGTTCTTCTAGGGAAGAGAGAGTCATGTTTTCCTACCC 5092609 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGT--AGTCATTCTTTGGAAAT 4432 ||||||| ||||||| | |||| || | || | ||||||||| |||||| Sbjct 5092610 GTAATCACAAAATTCTAAT-------TACA-AAATTCTATTCCGGTCATTCTTGGGAAAT 5092661 Query 4433 GTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGT 4492 | || |||||| | | ||||| || | ||| | | ||||| ||||||| || Sbjct 5092662 ACCTGAATTCATTCCTGGATGGGGGCCAGGGTAGGTTTCTGTTCTTGCCTATGCCCACGT 5092721 Query 4493 TTTG 4496 | || Sbjct 5092722 TCTG 5092725 >seq1040 Length=722020 Score = 194 bits (214), Expect = 1e-44 Identities = 188/242 (78%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| ||| |||||||| || ||||| |||||||| || | ||| ||| Sbjct 661469 AGCTCTTAAGCCACATGGTGCACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 661410 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | ||| | | | |||| || || ||| Sbjct 661409 ATCTTCTCCAGCCGGAAGGAGTGGGGGCAGTGCTGAGACTCCCTTCGCAGAACCAGGATC 661350 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| |||||||||||||| | || ||||| |||||||| ||||| Sbjct 661349 TCTTGCTGGATGGGGACAGAGTTCATGTGGTAATTTATCTTCCCTTCAGCATTGACACAG 661290 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| ||||| || ||||| ||||||||||||||||| || || |||||| Sbjct 661289 CCCAAGTGGCGGCACTTGGCCTCCCAGATCACAGAGGGATATCTCTCAGCGTCCTCATTG 661230 Query 27171 CG 27172 || Sbjct 661229 CG 661228 >seq259 Length=3797764 Score = 129 bits (142), Expect = 4e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | || ||| |||||||| |||||||||||||||||||| Sbjct 1123334 TTATAAACAGAACTGCCTCCTACTACCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 1123393 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||||||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 1123394 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 1123453 Query 4285 AGCTCC 4290 | ||| Sbjct 1123454 GGTTCC 1123459 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || ||||||||||||||| | ||||| |||||||||||| ||||||| |||| Sbjct 1120256 TACTCTGGCAGAAGTTTGTATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 1120315 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 || || ||||| ||||| |||||||| ||| |||||| || ||| | |||| ||||| Sbjct 1120316 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCC 1120375 Query 4165 TT 4166 || Sbjct 1120376 TT 1120377 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 1130592 CTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCGGG 1130651 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| | ||||||||||| |||||||||||| || Sbjct 1130652 AATAGAGAACCATGTCTTCCTCCCCATAATCACCAAATTCTGTTTACCT 1130700 Score = 95.1 bits (104), Expect = 9e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||||||||||||||||||||||||||||| | |||||| || || |||| Sbjct 1113366 ATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACAT 1113425 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||| ||||||| ||| ||| Sbjct 1113426 CAGATAGAACACCTGGGTAT 1113445 >seq537 Length=2461945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 245824 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 245883 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || || || || ||| ||||| |||||||| | Sbjct 245884 CTTCTCTGTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGA 245943 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195 | | ||| || | || || || ||| || |||||||| Sbjct 245944 TTTTCACTCCCTTGGAAGACAGTTCCTTGGCGTTTGTAGATCC 245986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361234060098143