Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1020 343 2e-89 seq417 253 2e-62 seq1832 212 7e-50 seq3 131 2e-25 seq148 123 3e-23 seq158 120 4e-22 >seq1020 Length=850931 Score = 343 bits (380), Expect = 2e-89 Identities = 645/942 (68%), Gaps = 16/942 (2%) Strand=Plus/Minus Query 23784 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCC 23839 ||||| ||| |||||| |||| || | |||| ||| ||| | || ||||| | ||| Sbjct 339111 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCATTCC 339052 Query 23840 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATAT 23899 ||| | || ||||| || || | || || ||| ||||| || ||||| | ||| || Sbjct 339051 CATCCTCTGATATTCGCCTACTCTCTTCTC---AAAGTTAGTCTTCCCTTCCAGTGAAAT 338995 Query 23900 ATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGA 23959 ||| ||||| || || ||||||| || | | | | ||| || | || Sbjct 338994 ATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAG 338935 Query 23960 AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTAT 24019 || | || ||||| || ||||| ||||| ||||| | | |||||||| || || Sbjct 338934 CATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAAT 338875 Query 24020 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 24079 || || || || | ||| | || || || || || || || || || | | || Sbjct 338874 GAGCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCAT---TAAT 338818 Query 24080 AATAGAT--CTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 24136 ||| | ||| ||| | | || ||| | | | ||||| ||||||| || Sbjct 338817 AATTATTTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCA 338758 Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 || || || ||||||| |||||| ||||| ||| | | ||| |||||||| | ||| || Sbjct 338757 GGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCC 338698 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||| |||||||| || || ||||| ||||| || ||||| || |||||||||| || Sbjct 338697 AGGCATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGAT 338638 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTAT 24313 |||||| || || ||||| || | || | ||| || || ||| | |||| | Sbjct 338637 TCCTTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGT 338578 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| | |||||||| |||||||| |||||||||||||||||||| || || || || Sbjct 338577 CCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAA 338518 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 |||| | | |||| || |||||||| ||| || ||| | | ||||| ||||| || Sbjct 338517 GAGAAATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTC 338458 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 ||||| |||||||| ||||| | ||| || | |||||||| | || || |||||||| Sbjct 338457 AGAATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTG 338398 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 |||||| | ||| || || | || |||||||| || || || ||||| |||||||| Sbjct 338397 AACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAA 338338 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || |||| || || |||||| ||| | || || || | || | ||| | | Sbjct 338337 GAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTG 338278 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 || || || || | |||||| | ||| |||||||||| || ||||| || || ||||| Sbjct 338277 AATGTCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATA 338218 Query 24674 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | | | ||| || ||| || | || || || || ||||| Sbjct 338217 CCTCTGCCAAATATCACAGTACTCGATGGGGAAGATGACAAA 338176 >seq417 Length=2207251 Score = 253 bits (280), Expect = 2e-62 Identities = 287/384 (75%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||||| || || || || ||||||| |||||| ||||| ||||| | ||| Sbjct 863953 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCA 864012 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||||||||| || ||||| |||| || || || ||||| ||||| ||| |||| Sbjct 864013 TTGGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAA 864072 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 || ||||||||||| |||||||| || || |||||| | | || | ||| || || | Sbjct 864073 GAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTA 864132 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | |||| ||||| ||||| | |||| ||| ||||||||||||||| Sbjct 864133 GCCTCTTTGTCCCCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATT 864192 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| || || || |||||| | | |||| | |||||||| || || ||||| Sbjct 864193 GTCTCCATGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATG 864252 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | ||||||||||| || |||||||||||||| |||| ||||| || || |||||||| Sbjct 864253 AGGAGACTATACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAG 864312 Query 24477 CTAGCCTCGGTAATCTGTACTTCT 24500 | || || |||||||| |||||| Sbjct 864313 CGGGCTTCTGTAATCTGAACTTCT 864336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 24523 TTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 24582 ||||||| || || ||| |||| | ||||| || |||| ||||| |||||| ||| Sbjct 864553 TTTCATTTACCATGCCGGCACTCGGCGCAAAGAAAGCCAGAACATGGGATATAAAGTATC 864612 Query 24583 TTTCGTCTGGTGTTAGTTTATTCCAATCATTGA-TATCTTTAGATATATCCACTTCTTCC 24641 | || || || | || ||||| ||| | || || || | |||||||||||| Sbjct 864613 TCTCCTCAGGCTTCAGGG-ATTCCCGCGGCTGAATGTCCTTGGAAAGATCCACTTCTTCA 864671 Query 24642 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATT 24701 |||||||||| || ||||| || || |||||||| | ||| || ||||| || | || Sbjct 864672 GCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTACTCGATA 864731 Query 24702 GGAAAAATAACAAA 24715 || || || ||||| Sbjct 864732 GGGAAGATGACAAA 864745 >seq1832 Length=302895 Score = 212 bits (234), Expect = 7e-50 Identities = 412/606 (68%), Gaps = 12/606 (2%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||||| | || || || | ||||| |||||| ||||| ||||| | || Sbjct 206738 TGTTTGAACATCAGGTAGGCAAAGTCACGGTGTAAACCCTCATCTCTGCTAATAAGCTCA 206797 Query 24180 TTGGAAAAC-GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 ||||||||| ||||| || ||||| |||| | || || ||||| |||| ||||| | Sbjct 206798 TTGGAAAACAGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGTATATCAACGCAGA 206857 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--- 24295 || ||| ||||| | |||||||| || |||||| | | || | ||| || || Sbjct 206858 AGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAACCCATTCCCCGTAGGT 206917 Query 24296 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 | | | |||| | ||| | ||||||| |||||||| || |||||||||| Sbjct 206918 AGCCTCTTTGTCCCCAACCCAATGCAAGGCCCAATTTGCCTTCTTCCTTCCACAAGGCAT 206977 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 |||||| || | || |||||| | | | || || ||||| | ||| || ||| | Sbjct 206978 TGTCTCCATGGTGTTGAAGAGAAATTCCCTCTCTTTGGAATCTT--ATATAAGTGTCAGT 207035 Query 24416 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA 24475 | |||||| |||| || ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 207036 GAGGAGACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 207095 Query 24476 TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTAT 24535 | || || || ||||| || ||| | | | | || | || |||||||| ||||| Sbjct 207096 GCAGGCTTCTGTCATCTGAACCTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTAT 207155 Query 24536 TCCGTCACTGGCTGCAAAAAACGCCA------ATACATGTTTTATAAAATATTTTTCGTC 24589 || |||| || |||| || |||| || || |||||||| | | || || Sbjct 207156 GCCAACACTTGCCACAAAGAAAGCCAGAACGTGAACGTGGGGTATAAAATCTCTCTCCTC 207215 Query 24590 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 24649 || | || | ||| | | || || || || | || ||| |||| ||||||| Sbjct 207216 AGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGAAAGATTCACCTCTTTAGCTGTCCA 207275 Query 24650 AAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 ||| || ||||| || || ||| |||| | ||| | |||||||| | || || || || Sbjct 207276 AAAAGAAGCCTCAGCTTTCTTACACATCTGCCAAAGATCATGATACTCCATAGGGAAGAT 207335 Query 24710 AACAAA 24715 | ||| Sbjct 207336 GAGAAA 207341 >seq3 Length=9835568 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 152606 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 152665 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 152666 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 152725 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 152726 CTGTTTCTTATACCATA 152742 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 150104 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCGATGTGGATGT 150163 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 150164 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 150223 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | |||| ||||||||| | || ||||||| | |||| | || || |||| Sbjct 150224 TCTGTGAAATTTCCCACACGGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 150274 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 157356 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 157415 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| || || ||||| | || ||||| |||| Sbjct 157416 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 157475 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || || || || || || | ||| | Sbjct 157476 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 157535 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 157536 GTTTATTTGA 157545 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 162117 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 162176 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 162177 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 162236 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 162237 AGGCTCCAGGTAAAT 162251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 174955 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTCGAGACGGCAATCCTTGCTGCCAGGA 175014 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | || || | || || ||| | || || | || ||| || | Sbjct 175015 TGGCATAGTCAGGGTGCTTAGTCGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTA 175074 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 175075 GTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 175120 >seq148 Length=4816872 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| ||||| || || | Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||| | Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 2362269 CCACAACCCGTTCTCC 2362284 >seq158 Length=7371824 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| ||||||||||||||||||||||| || || | || || Sbjct 3463986 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 3463927 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||| || Sbjct 3463926 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 3463867 Query 24279 ATAAGTCTTTCTCC 24292 | || |||||| || Sbjct 3463866 ACAACTCTTTCCCC 3463853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593692708022640