Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq314 113 3e-20 seq85 113 3e-20 seq949 107 1e-18 seq47 105 4e-18 seq1198 95.1 8e-15 seq1114 95.1 8e-15 seq199 86.0 4e-12 seq128 82.4 5e-11 >seq314 Length=2398313 Score = 113 bits (124), Expect = 3e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| || || ||||| ||||| |||| | || Sbjct 2323437 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 2323496 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || ||||| || ||||||||||| | |||| | || ||||||||| Sbjct 2323497 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTC 2323555 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | ||||| || | ||||||| Sbjct 2323556 TTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGACCTCGAGGGTGATGG 2323614 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | ||||| || || || |||||||||||||||||| || Sbjct 2323615 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 2323652 >seq85 Length=4131313 Score = 113 bits (124), Expect = 3e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| || || ||||| ||||| |||| | || Sbjct 1818199 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 1818258 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || ||||| || ||||||||||| | |||| | || ||||||||| Sbjct 1818259 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTC 1818317 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | ||||| || | ||||||| Sbjct 1818318 TTGGAT-TTTGGCTTTGACATTCTCAATAGCGTCACTGGGCTCGACCTCGAGGGTGATGG 1818376 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | ||||| || || || |||||||||||||||||| || Sbjct 1818377 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATCTCT 1818414 >seq949 Length=596474 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| |||||||| || || || ||| | || Sbjct 262169 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 262228 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || |||| ||||||||| ||| | || ||| || || Sbjct 262229 TCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 262288 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 262289 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 262348 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||||||||||||||| Sbjct 262349 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 262380 >seq47 Length=4803410 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| || ||||| ||||||||||| ||||| || |||| Sbjct 4289651 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4289710 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || | || ||||||||| ||| | || ||||||||| Sbjct 4289711 CTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4289770 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 4289771 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4289830 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | || ||||| ||||||||||| Sbjct 4289831 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289863 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| || ||||| ||||||||||| ||||| || |||| Sbjct 4289423 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4289482 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || || || | || ||||||||| ||| | || ||||||||| Sbjct 4289483 CTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4289542 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 4289543 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 4289602 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | || ||||| ||||||||||| Sbjct 4289603 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 4289635 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| || ||||| ||||||||||| ||||| || |||| Sbjct 4289879 CAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4289938 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || | || ||||||||| ||| | || ||| ||||| Sbjct 4289939 CTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTC 4289998 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 4289999 CTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 4290058 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| | || ||||||||||||||||| Sbjct 4290059 CTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 4290091 >seq1198 Length=804178 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| ||||| || || || Sbjct 573711 CCACCCCTCAGGCGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 573652 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||||||||| |||||||||| ||||||||| ||| Sbjct 573651 AGAGTGTGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGGGGG 573592 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || || || ||||| ||| | || | || | || | | || || Sbjct 573591 ATGCCCTGTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCTACC 573532 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||| |||||||| || || ||||| ||||||||||| Sbjct 573531 TCTAGGTTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 573485 >seq1114 Length=1661397 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| |||||||| || || || ||| | || Sbjct 1502917 AGAACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1502976 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || || | ||||||||| ||| | || ||| || || Sbjct 1502977 TCCAGCTGCTTGCCAGCAAAGATAAGTCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCT 1503036 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | | ||| | | || || |||| |||||||| Sbjct 1503037 TGGATCTTCGCCTTCACGTTTTCAGTGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1503096 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||||||||| Sbjct 1503097 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1503128 >seq199 Length=3010087 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| || || ||||| ||| | |||| | || Sbjct 689108 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACCGAGTACGGCCATCT 689049 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || ||| | || | ||||||||| | |||| | || ||||||||| Sbjct 689048 TCCAGCTGTTTGCCCGCAAAAGTCAGACTCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTC 688990 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | | | || | | || || || | ||||||| Sbjct 688989 TTGGAT-TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGTGATGG 688931 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | ||||| || || || |||||| ||||||||||| || Sbjct 688930 TCTTGCCCGTCAGGGTCTTCACAGAGATCTGCATCTCT 688893 >seq128 Length=2980057 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || |||||||| || || ||||| ||||| |||| | || Sbjct 204318 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCT 204377 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 | || ||| ||||| || ||||| || |||||||||| | |||| | || ||||||||| Sbjct 204378 TTCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTC 204436 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | || || || | |||| || Sbjct 204437 TTGGAT-TTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCGAGGGTGACGG 204495 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | | ||| | || || |||||||||||||||||| || Sbjct 204496 TCTCGCCT-TCAGGGTCTTCACAAAGATCTGCATCTCT 204532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323056671546080