Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1020 253 2e-62 seq417 194 2e-44 seq158 102 8e-17 >seq1020 Length=850931 Score = 253 bits (280), Expect = 2e-62 Identities = 590/884 (67%), Gaps = 13/884 (1%) Strand=Plus/Minus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| | | ||| | |||||||| | |||||||| ||||| Sbjct 339078 ATTCTCTGTTGGACTTGACATCATTCCCATCCTCTGATATTCGCCTACTCTCTTCTCAAA 339019 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 | || || || ||||| | ||||||||| |||||||| ||||| ||||||| | | Sbjct 339018 G---TTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCT 338962 Query 16033 ATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTG 16092 | || | | || | |||| || | || || ||||| || || |||||||| Sbjct 338961 GAAAACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTG 338902 Query 16093 TTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtt 16152 |||||||| || ||||| || || | || ||||| | || || || | || | Sbjct 338901 CTTCATTAATGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCCGTGAGGAACTC 338842 Query 16153 tttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT 16212 | ||||| ||| || | ||| ||||| || | ||| | || | |||| |||| Sbjct 338841 CTGCTCTATCCGAACGGCATTAATAATTATTTCCTTCACT-CTCTGCT---CGGAAGGTT 338786 Query 16213 T----AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268 | | | |||||| ||||| | || ||||| ||||| || || || || || || | Sbjct 338785 TGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGC 338726 Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328 | | | || || ||||| | || || ||||| || || ||||| || | ||| |||| Sbjct 338725 TAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATA 338666 Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388 | | ||||| ||||||||||||| || ||||| || || ||||| || || | || | Sbjct 338665 TCGATGCAAAAGAACCAGAAAAGAGGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTT 338606 Query 16389 CACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAA 16448 | ||||| || | | ||| | |||| | ||||||| ||| || | || | Sbjct 338605 CCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAATCTGCCTTCTTCTTTA 338546 Query 16449 CACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATAT 16508 |||| ||| |||| || || || || | | | | |||||||| |||| ||||| Sbjct 338545 CACAAGGCATTGTCTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATAT 338486 Query 16509 AAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAAC 16568 |||| || | || | ||| ||||| || ||||| || || ||||| || | || || Sbjct 338485 AAGTGTCAGTGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAAATTGGAAGT 338426 Query 16569 CATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTT 16628 |||| || || | ||||| | || || ||||| | ||||| || | ||||||| Sbjct 338425 CATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTT 338366 Query 16629 CGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688 | || || || ||||| || |||||||| || || || | ||| ||||| | | | | Sbjct 338365 CATTTACGATGCCATCACTCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCT 338306 Query 16689 CGTTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACA 16747 | | | || | | || ||||| || || || || | ||| |||| ||| | Sbjct 338305 CCTCAGGCTTCAGGGATT-CCCAGTGCTGAATGTCCTTGGAAAGATCCACCTTTTCAGCT 338247 Query 16748 GTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 |||||||| ||||| |||| || |||||| | | ||| || || Sbjct 338246 GTCCAAAAGGAAGCCTCAGCTTTCTTATACCTCTGCCAAATATC 338203 >seq417 Length=2207251 Score = 194 bits (214), Expect = 2e-44 Identities = 463/696 (67%), Gaps = 12/696 (2%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| | | ||| | ||||| || | |||||||| |||| Sbjct 863646 ATTCTCTGTTGGACTTGACATCATTCCCATCCTCTGATACTCGCCTACTCTCTTCACAAA 863705 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 ||| || || || ||||| | ||||||||| |||||| | ||||| ||||||| | | Sbjct 863706 GAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATATAGTCAAATGGATTTTCTACTCC 863765 Query 16033 ATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTG 16092 | || | | || | |||| || | || || ||||| || || |||||||| Sbjct 863766 GAAAACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTG 863825 Query 16093 TTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtt 16152 |||||||| || ||||| || || || || | || | || || | | || Sbjct 863826 CTTCATTAACATGCAATTCATCCCAATGAACTTCATGGGCAAGGCCTCCTTGATGAATCC 863885 Query 16153 tttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT 16212 | ||||| | ||| || | ||| ||||| || | ||| | || | |||| |||| Sbjct 863886 CTGCTCTATCTGAACGGCATTAATAATTATTTCCTTCACTCC-CTGCT---CGGAAGGTT 863941 Query 16213 T----AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268 | | | |||||| ||||| | || ||||| ||||| || || || || || || | Sbjct 863942 TGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGC 864001 Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328 | || | || || ||||| || || || ||||| || | ||||| || | ||| |||| Sbjct 864002 TAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATA 864061 Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388 | | |||| |||||||||||||| || ||||| || || ||||| | || | || | Sbjct 864062 TCGACTCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTT 864121 Query 16389 CACCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgttt 16446 | ||||| || || ||| | | | ||||| ||||| ||| | | || Sbjct 864122 CCCCGTAGGTAGCCTCTTTGTCC--CCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTT 864179 Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506 ||||| ||| |||| || || || || | | | | |||||| | |||| ||| Sbjct 864180 TACACAAGGCATTGTCTCCATGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAAT 864239 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 ||||| || || || | ||||||||| || |||||||| || ||||| | || || || Sbjct 864240 GTAAGTGTCAATGAGGAGACTATACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAA 864299 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || || | ||||| | || || ||||| Sbjct 864300 GCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 864335 >seq158 Length=7371824 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || ||| |||| | Sbjct 3477073 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 3477014 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||| || ||||| || ||||||||||||||||| |||||||| ||||| || | Sbjct 3477013 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 3476954 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 3476953 CCATAAAATCAAAGGGATTTTCTG 3476930 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 3470465 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 3470406 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | ||| || | |||||||||||||| Sbjct 3470405 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 3470363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462489493009800