Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1020 253 2e-62
seq417 194 2e-44
seq158 102 8e-17
>seq1020
Length=850931
Score = 253 bits (280), Expect = 2e-62
Identities = 590/884 (67%), Gaps = 13/884 (1%)
Strand=Plus/Minus
Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972
||| ||| || | ||||||| | | ||| | |||||||| | |||||||| |||||
Sbjct 339078 ATTCTCTGTTGGACTTGACATCATTCCCATCCTCTGATATTCGCCTACTCTCTTCTCAAA 339019
Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032
| || || || ||||| | ||||||||| |||||||| ||||| ||||||| | |
Sbjct 339018 G---TTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCT 338962
Query 16033 ATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTG 16092
| || | | || | |||| || | || || ||||| || || ||||||||
Sbjct 338961 GAAAACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTG 338902
Query 16093 TTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtt 16152
|||||||| || ||||| || || | || ||||| | || || || | || |
Sbjct 338901 CTTCATTAATGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCCGTGAGGAACTC 338842
Query 16153 tttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT 16212
| ||||| ||| || | ||| ||||| || | ||| | || | |||| ||||
Sbjct 338841 CTGCTCTATCCGAACGGCATTAATAATTATTTCCTTCACT-CTCTGCT---CGGAAGGTT 338786
Query 16213 T----AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268
| | | |||||| ||||| | || ||||| ||||| || || || || || || |
Sbjct 338785 TGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGC 338726
Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328
| | | || || ||||| | || || ||||| || || ||||| || | ||| ||||
Sbjct 338725 TAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCATCAGGCCACGTTTCTTGAGCCAGAATA 338666
Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388
| | ||||| ||||||||||||| || ||||| || || ||||| || || | || |
Sbjct 338665 TCGATGCAAAAGAACCAGAAAAGAGGATTCCTTCCACAGCAGCAAAAGCCACAACCCGTT 338606
Query 16389 CACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAA 16448
| ||||| || | | ||| | |||| | ||||||| ||| || | || |
Sbjct 338605 CCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATGCAAGGCCCAATCTGCCTTCTTCTTTA 338546
Query 16449 CACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATAT 16508
|||| ||| |||| || || || || | | | | |||||||| |||| |||||
Sbjct 338545 CACAAGGCATTGTCTCGATGGCGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATAT 338486
Query 16509 AAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAAC 16568
|||| || | || | ||| ||||| || ||||| || || ||||| || | || ||
Sbjct 338485 AAGTGTCAGTGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCAAATTGGAAGT 338426
Query 16569 CATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTT 16628
|||| || || | ||||| | || || ||||| | ||||| || | |||||||
Sbjct 338425 CATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTT 338366
Query 16629 CGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688
| || || || ||||| || |||||||| || || || | ||| ||||| | | | |
Sbjct 338365 CATTTACGATGCCATCACTCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCT 338306
Query 16689 CGTTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACA 16747
| | | || | | || ||||| || || || || | ||| |||| ||| |
Sbjct 338305 CCTCAGGCTTCAGGGATT-CCCAGTGCTGAATGTCCTTGGAAAGATCCACCTTTTCAGCT 338247
Query 16748 GTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791
|||||||| ||||| |||| || |||||| | | ||| || ||
Sbjct 338246 GTCCAAAAGGAAGCCTCAGCTTTCTTATACCTCTGCCAAATATC 338203
>seq417
Length=2207251
Score = 194 bits (214), Expect = 2e-44
Identities = 463/696 (67%), Gaps = 12/696 (2%)
Strand=Plus/Plus
Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972
||| ||| || | ||||||| | | ||| | ||||| || | |||||||| ||||
Sbjct 863646 ATTCTCTGTTGGACTTGACATCATTCCCATCCTCTGATACTCGCCTACTCTCTTCACAAA 863705
Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032
||| || || || ||||| | ||||||||| |||||| | ||||| ||||||| | |
Sbjct 863706 GAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATATAGTCAAATGGATTTTCTACTCC 863765
Query 16033 ATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTG 16092
| || | | || | |||| || | || || ||||| || || ||||||||
Sbjct 863766 GAAAACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACGAACTCAATATACTG 863825
Query 16093 TTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtt 16152
|||||||| || ||||| || || || || | || | || || | | ||
Sbjct 863826 CTTCATTAACATGCAATTCATCCCAATGAACTTCATGGGCAAGGCCTCCTTGATGAATCC 863885
Query 16153 tttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT 16212
| ||||| | ||| || | ||| ||||| || | ||| | || | |||| ||||
Sbjct 863886 CTGCTCTATCTGAACGGCATTAATAATTATTTCCTTCACTCC-CTGCT---CGGAAGGTT 863941
Query 16213 T----AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268
| | | |||||| ||||| | || ||||| ||||| || || || || || || |
Sbjct 863942 TGTGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGC 864001
Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328
| || | || || ||||| || || || ||||| || | ||||| || | ||| ||||
Sbjct 864002 TAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATA 864061
Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388
| | |||| |||||||||||||| || ||||| || || ||||| | || | || |
Sbjct 864062 TCGACTCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTT 864121
Query 16389 CACCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgttt 16446
| ||||| || || ||| | | | ||||| ||||| ||| | | ||
Sbjct 864122 CCCCGTAGGTAGCCTCTTTGTCC--CCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTT 864179
Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506
||||| ||| |||| || || || || | | | | |||||| | |||| |||
Sbjct 864180 TACACAAGGCATTGTCTCCATGGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAAT 864239
Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566
||||| || || || | ||||||||| || |||||||| || ||||| | || || ||
Sbjct 864240 GTAAGTGTCAATGAGGAGACTATACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAA 864299
Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
||||| || || | ||||| | || || |||||
Sbjct 864300 GCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 864335
>seq158
Length=7371824
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || ||||||||| | | | || ||| |||| |
Sbjct 3477073 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 3477014
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
|||||| || ||||| || ||||||||||||||||| |||||||| ||||| || |
Sbjct 3477013 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTCT 3476954
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 3476953 CCATAAAATCAAAGGGATTTTCTG 3476930
Score = 82.4 bits (90), Expect = 7e-11
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| |||
Sbjct 3470465 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 3470406
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
| |||||||| || | ||| || | ||||||||||||||
Sbjct 3470405 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 3470363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462489493009800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |