Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1020 251 7e-62 seq417 174 2e-38 seq1832 138 1e-27 seq148 102 8e-17 >seq1020 Length=850931 Score = 251 bits (278), Expect = 7e-62 Identities = 598/897 (67%), Gaps = 15/897 (2%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || | ||||| | Sbjct 339104 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCATTCCCATCCT 339046 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||| | ||||| || |||||| ||||| || ||||||||||| ||||| || Sbjct 339045 CTGATATTCGCCTACTCTCTTCTCAAAG---TTAGTCTTCCCTTCCAGTGAAATATTCTC 338989 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| |||||||||||| | | || || || || ||||||| || | | | Sbjct 338988 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAAG 338929 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 || || || | |||||||||||| || |||||| |||||||| || || || || Sbjct 338928 TCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAATGAGCTT 338869 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | || | || || | ||||| || || | | ||||| || Sbjct 338868 CACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCAT---TAATAATTAT 338812 Query 14155 ---CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 14211 | | | | | | ||||| | || ||||| || || | || ||||| Sbjct 338811 TTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGCAAA 338752 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 ||||| || | ||||||||||| ||| ||||||| || ||||| | | || ||||| Sbjct 338751 GTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGGCAT 338692 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 || || ||||| || | ||| ||||| | || || || || ||||||| ||||| || Sbjct 338691 CAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCCTTC 338632 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 || |||||||| || | | ||||| || | | | | ||||| | |||| | Sbjct 338631 CACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCAATG 338572 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451 ||||| || | || || || | | || |||||| || || || || || | | Sbjct 338571 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAGAGAAA 338512 Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| | ||||| | | | ||| || || ||| | || | || ||||| ||||| || Sbjct 338511 TTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGAATG 338452 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571 ||||||||||| || | || || |||| ||||| | ||||||| || || || Sbjct 338451 GATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 338392 Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631 | | ||| | || |||| |||||||| || || |||||||| |||||||| || || Sbjct 338391 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAAAGC 338332 Query 14632 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA-- 14689 || | || ||||||||| ||| ||| | || || ||| | ||| || Sbjct 338331 CAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGT--GCTGAATG 338274 Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATAC 14746 ||||| |||||||| || | ||| |||||||||| ||| ||||||| |||||| Sbjct 338273 TCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATAC 338217 >seq417 Length=2207251 Score = 174 bits (192), Expect = 2e-38 Identities = 468/712 (66%), Gaps = 18/712 (3%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || | ||||| | Sbjct 863620 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCATTCCCATCCT 863678 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || ||||||||||||| || ||||||||||| ||||| || Sbjct 863679 CTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 863738 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||| | |||||||||||| | || || || || ||||||| || | | | Sbjct 863739 CATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTCCAGCATAAG 863798 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 || || || | |||||||||||| || |||||| |||||||| || || | || Sbjct 863799 TCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCAATGAACTT 863858 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 | || | | | | ||| | | ||||| || || | ||||||| Sbjct 863859 CATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCAT------TAATAAT 863912 Query 14155 CGTAATAATTTCATTAGAAGGA-GGATATTTT-------AGATGTTTAAAAATTAAACAC 14206 || | |||| | | ||| ||| || ||||| || || | || Sbjct 863913 --TATTTCCTTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAG 863970 Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 ||||| ||||| || | ||||||||||| ||||||||||| || ||||| || | || Sbjct 863971 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCA 864030 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 ||||||| | ||||| || | ||| ||||| | | || || || |||||||| ||| Sbjct 864031 GGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGAAAAGAAGATT 864090 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || || |||||||| | | | ||||| || | | || | ||||| | ||| Sbjct 864091 CCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCCCCGATC 864150 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 || ||||| | | | || || | | || |||||| || || || || || Sbjct 864151 CAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCATGGCGTTGAAG 864210 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | | |||| | |||| | | | |||||| || ||||| || | |||||||| ||| Sbjct 864211 AGAAATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCA 864270 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 || || ||||||||||| | || || || ||||| ||||| | ||||||| Sbjct 864271 GAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 864322 >seq1832 Length=302895 Score = 138 bits (152), Expect = 1e-27 Identities = 550/861 (64%), Gaps = 15/861 (2%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || || || | ||||| |||| |||| || ||||||| |||||| || ||| Sbjct 206447 GACATCACTCCTATCCTCTGATACTCACCTCCTCTCTTCTCAAAGAGGTTAGTCTTCCCT 206506 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| ||||||| |||||||||||| | | | || || | || Sbjct 206507 TCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAA 206566 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 |||||||| | || || || ||||| |||||||| || ||||| ||| Sbjct 206567 CCTAGTTCCTGCCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCAA 206626 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || || | || | | | | || || | ||||| || Sbjct 206627 TTCATCCCAATGAGCTTCAGCGGCAAGGCCTCTGGGAGGAACTCCTGGTCTATCCTAACG 206686 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197 || | | | || || | | | | | | ||||| || || ||||| || Sbjct 206687 GCTTTGATAATTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTGAAC 206746 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 || | | ||||| |||| || | ||||||||||| |||||||| || || ||||| Sbjct 206747 ATCAGGTAGGCAAAGTCACGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAAC 206806 Query 14258 -GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316 || | || ||||||| | | ||| || | ||| |||| || | || || | Sbjct 206807 AGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGTATATCAACGCAGAAGAACCAAA 206866 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 |||| | ||||| || |||||||| | | | | ||| || | | || | ||| Sbjct 206867 AAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACAACCCATTCCCCGTAGGTAGCCTCTTT 206926 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 || | | ||| | ||||| | | || || | | || |||||| || || Sbjct 206927 GTCCCCAACCCAATGCAAGGCCCAATTTGCCTTCTTCCTTCCACAAGGCATTGTCTCCAT 206986 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 14495 | || || | | |||| ||||||| | | ||| || || || ||| | || | | Sbjct 206987 GGTGTTGAAGAGAAATTCCCTCTCTTTGGAATCTT---ATATAAGTGTCAGTGAGGAGAC 207043 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 || |||| ||||| || ||||||||||| || || || || ||||| ||||| | |||| Sbjct 207044 TACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTT 207103 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 ||| | || |||||| | | | | || |||| |||||||| ||||| ||| ||| Sbjct 207104 CTGTCATCTGAACCTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTATGCCAACAC 207163 Query 14616 TAGCTGCAAAAAATGCCA------ATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA 14669 | || |||| || |||| | || ||||| | | ||| ||| | | Sbjct 207164 TTGCCACAAAGAAAGCCAGAACGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCTTCA 207223 Query 14670 GTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14727 | || ||| | ||| || ||||| ||||||| || || | | ||||||||||| Sbjct 207224 GGGATTCCCAGT--GCTGAATGTCCTTGGAAAGATTCACCTCTTTAGCTGTCCAAAAAGA 207281 Query 14728 AGCAACAGCTTTTTTATACAT 14748 ||| ||||||| ||| |||| Sbjct 207282 AGCCTCAGCTTTCTTACACAT 207302 >seq148 Length=4816872 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || || |||||||| | Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 2362269 CCACAACCCGTTCTCC 2362284 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2360427 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2360485 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 2360486 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2360545 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 2360546 CATAAAGTCAAATGGATTT 2360564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482322127857240