Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq314 98.7 8e-16 seq29 93.3 3e-14 seq85 89.7 4e-13 seq33 86.0 5e-12 seq530 82.4 6e-11 seq59 82.4 6e-11 >seq314 Length=2398313 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | ||| |||| ||| || || || ||||| || || || ||||| | | Sbjct 2323422 CCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 2323481 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| |||||||||||| | || || | || || || || Sbjct 2323482 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 2323541 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || |||| | || ||||| | ||| |||||||| ||||||| Sbjct 2323542 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGAC 2323600 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 2323601 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2323648 >seq29 Length=5782310 Score = 93.3 bits (102), Expect = 3e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| ||||||||||||||||| | || ||| | | |||||||||||| Sbjct 156613 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGTGTCCATCTTCCAATTGC 156554 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 ||||| ||| |||| ||||| || ||||| || | |||||||||| Sbjct 156553 TTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 156505 >seq85 Length=4131313 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| || || || ||||| || || || ||||| | | Sbjct 1818184 CCACCCCAGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 1818243 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| |||||||||||| | || || | || || || || Sbjct 1818244 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 1818303 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || |||| | || ||||| | ||| || ||||| ||||||| Sbjct 1818304 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTCTCAATAGCGTCACTGGGCTCGAC 1818362 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| || || ||||| || ||||| Sbjct 1818363 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1818410 >seq33 Length=6086033 Score = 86.0 bits (94), Expect = 5e-12 Identities = 172/252 (68%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | |||||||| ||| | | || || ||||| | || | ||||| || || | Sbjct 2214746 AAGACTTCTTCTTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACT 2214805 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| ||| | | Sbjct 2214806 CCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAATA 2214865 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | ||||| || ||||| || | ||||||||||| ||| | | ||| || | | Sbjct 2214866 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTT 2214925 Query 18256 CAACAGTGTCACC--GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | || ||| || ||| || || | |||||| | || || || | ||||| || Sbjct 2214926 C--CATTGTACCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCAC 2214983 Query 18314 AAAAATTTGCAT 18325 ||||| ||||| Sbjct 2214984 GAAAATCTGCAT 2214995 >seq530 Length=2118653 Score = 82.4 bits (90), Expect = 6e-11 Identities = 164/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | |||| || ||||| | || | ||||| || || || |||||| Sbjct 63771 TTCCTTTTCTTAGCACCTCCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 63830 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||| Sbjct 63831 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 63890 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| | | ||||||||||| ||| | ||| || | | | | || Sbjct 63891 TGCTGATCAGGAGAAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTA 63950 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | |||||| | || || || | ||||| || ||||| ||| Sbjct 63951 TCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 64010 Query 18324 AT 18325 || Sbjct 64011 AT 64012 >seq59 Length=2579055 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATCCTCCCC--GTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | || || | ||||| | || | ||||| || || || |||||| Sbjct 1130437 TTCCTTTTCTTAGCATCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 1130496 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| ||||| Sbjct 1130497 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 1130556 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||||||||| Sbjct 1130557 TGCTGATCAGGAGGAATTCCTTCCTTATC 1130585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379326001668285