Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013
-01-16] 3,893 sequences; 2,400,150,193 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq314 98.7 8e-16
seq29 93.3 3e-14
seq85 89.7 4e-13
seq33 86.0 5e-12
seq530 82.4 6e-11
seq59 82.4 6e-11
>seq314
Length=2398313
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| ||||| || | ||| |||| ||| || || || ||||| || || || ||||| | |
Sbjct 2323422 CCACCCCGGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 2323481
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||||||| | || || | || || || ||
Sbjct 2323482 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 2323541
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || |||| | || ||||| | ||| |||||||| |||||||
Sbjct 2323542 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGAC 2323600
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | ||||| |||| || || ||||| || |||||
Sbjct 2323601 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2323648
>seq29
Length=5782310
Score = 93.3 bits (102), Expect = 3e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
||||| || ||||| ||||||||||||||||| | || ||| | | ||||||||||||
Sbjct 156613 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGTGTCCATCTTCCAATTGC 156554
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231
||||| ||| |||| ||||| || ||||| || | ||||||||||
Sbjct 156553 TTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 156505
>seq85
Length=4131313
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| || | ||| |||| ||| || || || ||||| || || || ||||| | |
Sbjct 1818184 CCACCCCAGAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 1818243
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||||||| | || || | || || || ||
Sbjct 1818244 AGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 1818303
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || |||| | || ||||| | ||| || ||||| |||||||
Sbjct 1818304 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTCTCAATAGCGTCACTGGGCTCGAC 1818362
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | ||||| |||| || || ||||| || |||||
Sbjct 1818363 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1818410
>seq33
Length=6086033
Score = 86.0 bits (94), Expect = 5e-12
Identities = 172/252 (68%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | |||||||| ||| | | || || ||||| | || | ||||| || || |
Sbjct 2214746 AAGACTTCTTCTTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACT 2214805
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||||||||||||||| | || || | |||||||| ||| ||||| ||| | |
Sbjct 2214806 CCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAATA 2214865
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| ||||| || ||||| || | ||||||||||| ||| | | ||| || | |
Sbjct 2214866 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTT 2214925
Query 18256 CAACAGTGTCACC--GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313
| || ||| || ||| || || | |||||| | || || || | ||||| ||
Sbjct 2214926 C--CATTGTACCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCAC 2214983
Query 18314 AAAAATTTGCAT 18325
||||| |||||
Sbjct 2214984 GAAAATCTGCAT 2214995
>seq530
Length=2118653
Score = 82.4 bits (90), Expect = 6e-11
Identities = 164/242 (68%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | |||| || ||||| | || | ||||| || || || ||||||
Sbjct 63771 TTCCTTTTCTTAGCACCTCCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 63830
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||
Sbjct 63831 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 63890
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263
|| ||||| | | ||||||||||| ||| | ||| || | | | | ||
Sbjct 63891 TGCTGATCAGGAGAAATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTA 63950
Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323
|| ||| || || | |||||| | || || || | ||||| || ||||| |||
Sbjct 63951 TCCGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 64010
Query 18324 AT 18325
||
Sbjct 64011 AT 64012
>seq59
Length=2579055
Score = 82.4 bits (90), Expect = 6e-11
Identities = 108/149 (72%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 18086 TTCTTTTTGTTATCCTCCCC--GTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143
||| |||| ||| | || || | ||||| | || | ||||| || || || ||||||
Sbjct 1130437 TTCCTTTTCTTAGCATCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA 1130496
Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203
||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||
Sbjct 1130497 ATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTC 1130556
Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232
|| ||||| || | |||||||||||
Sbjct 1130557 TGCTGATCAGGAGGAATTCCTTCCTTATC 1130585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379326001668285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |