Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq314 113 4e-20 seq85 113 4e-20 seq33 105 6e-18 seq29 96.9 3e-15 seq530 95.1 1e-14 seq174 93.3 4e-14 seq59 91.5 1e-13 seq1198 87.8 2e-12 seq2164 86.0 6e-12 >seq3 Length=9835568 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| Sbjct 160787 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 160846 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 160847 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 160906 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 160907 CCTGTCTCTGTCTGAGACTCAATGATGGC 160935 >seq314 Length=2398313 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| |||| || || || Sbjct 2323648 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 2323589 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | ||| |||||||| ||| | ||||| |||||| Sbjct 2323588 GACACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 2323529 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||||||| ||||||| ||| || || ||||| Sbjct 2323528 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATAAT 2323469 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || |||| ||| | || |||| || Sbjct 2323468 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTCCGGGGTGG 2323422 >seq85 Length=4131313 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || |||||| |||| || || || Sbjct 1818410 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 1818351 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | || | |||||| | ||| |||||||| ||| | ||||| |||||| Sbjct 1818350 GACGCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 1818291 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||||||| ||||||| ||| || || ||||| Sbjct 1818290 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATAAT 1818231 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || |||| ||| | || |||| || Sbjct 1818230 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTCTGGGGTGG 1818184 >seq33 Length=6086033 Score = 105 bits (116), Expect = 6e-18 Identities = 161/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || || || ||||| |||| |||||||| || Sbjct 2214995 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 2214936 Query 31253 G--ACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | ||| || |||| || || || ||| | ||| |||||||| | || || || Sbjct 2214935 GGTACAATG--GAAAATGTAAAGGCAAAGATTCA-GGATAAGGAAGGAATTCCTCCTGAT 2214879 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || ||||| |||||||| || ||||||| | | | ||| || || || Sbjct 2214878 CAGCAGAGACTGATATTTGCTGGCAAGCAACTGGAAGA-TGGACGCACTTTGTCTGACTA 2214820 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 2214819 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2214778 >seq29 Length=5782310 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || ||||| || || ||||| |||| |||||| | Sbjct 156408 AAGATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACTCTCGAGGTTGAAACC 156467 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || | | |||||||| | || || || Sbjct 156468 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 156527 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| || |||||||| || || || || Sbjct 156528 CAGCAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGACACACATTGTCTGACTAC 156587 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| ||||| ||||||||||| || | ||||| Sbjct 156588 AACATTCAAAAGGAATCCACTCTTCATCTTGTGTTGAGACT 156628 >seq530 Length=2118653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || || || ||||| |||| |||||||| || Sbjct 64012 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCG 63953 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| | | || || ||| Sbjct 63952 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTTCTCCTGATCAG 63893 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || || |||||||| || ||||||| | | | ||| || || || || Sbjct 63892 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACTTTGTCTGACTACAA 63834 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||||| || | ||||| Sbjct 63833 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 63795 >seq174 Length=4297676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || || || || | || || || ||||| |||| ||||| | Sbjct 3533295 AAGATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACTCTCGAGATTGAATCC 3533354 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | || |||| || || | || ||| |||||||| | || || || Sbjct 3533355 TCAGATACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3533414 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || ||||||||||| || |||||||| ||| || | || || Sbjct 3533415 CAGCAGAGACTGATCTTCGCTGGCAAGCAACTGGAAGACAGACAAACTTTGTGTGACTAC 3533474 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | ||||||||| || || ||||||||||| || | ||||| Sbjct 3533475 AGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 3533515 >seq59 Length=2579055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || || || ||||| ||| ||||||| || Sbjct 1130678 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGCGGTTGAACGCTCG 1130619 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| | || || || ||| Sbjct 1130618 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 1130559 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | || || || |||||||| || ||||||| | | | ||| || || || || Sbjct 1130558 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACTTTGTCTGACTACAA 1130500 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||||| || | ||||| Sbjct 1130499 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 1130461 >seq1198 Length=804178 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||| | | || || || Sbjct 573480 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCAACCTAGAGGTAGAG 573538 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | || || || | ||| | || || Sbjct 573539 CCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAACAGGGCATCCCCCCT 573598 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | ||| Sbjct 573599 GACCAGCAGAGGCTCATTTTTGCAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGAT 573658 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || ||||| ||||| || || ||||| || | |||||||| || Sbjct 573659 TATAACATCCAGAAAGAGTCGACCCTGCACCTGGTTCTGCGCCTGAGGGGTGG 573711 >seq2164 Length=79412 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 ||| || || || ||||| ||||| ||||| || |||||| || | || || || || Sbjct 51901 GCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCAAGGTCGAGCCCAGTGA 51960 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || | || | |||||| | ||| |||||||| || | ||||| |||||||| Sbjct 51961 CACTACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGTATCCCGCCTGACCAGCA 52020 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGA-CTCTATGACTATGAGCGATTATAACA 31373 |||||| || || | ||||||||| ||||| | | || ||| || || |||| | Sbjct 52021 GCGTCTGATTTTTGTGGGCAAACAGCTGGAAAATGGCCAT-ACTCTGTCAGACGATAATA 52079 Query 31374 TTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || || || || |||| ||| | || |||| || Sbjct 52080 TCCAGAAAGACTCCACCCTGCACTTGGTGCTTCGCCTCTGGGGTGG 52125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744707892560