Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq417 105 1e-17 seq148 87.8 4e-12 >seq417 Length=2207251 Score = 105 bits (116), Expect = 1e-17 Identities = 294/448 (66%), Gaps = 5/448 (1%) Strand=Plus/Minus Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||||| |||| | ||||||||| || ||||||||||||||| |||| | || | || Sbjct 864123 GGAACGGGTTGTGGACTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGAGTC 864064 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 || |||||| ||||||| | | | ||||||| ||||| | |||||||| | || Sbjct 864063 GATATTCTGGCTCAAGAAACGCAGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 864004 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 | || || || ||| | || | |||||||| ||| || |||| ||| | | || Sbjct 864003 TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---CCTGGT 863947 Query 102088 TGATACCCCATCAAGAGAAAGGA-TTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 | | || || ||| | ||| | ||||| | | | | ||||| | || || | Sbjct 863946 CCACAAACCTTC-CGAGCAGGGAGTGAAGGAAATAATTATTAATGCCGTTCAGATAGAGC 863888 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206 | | ||| ||| | || |||| | || || | || ||||| |||| ||| |||| Sbjct 863887 AGGGATTCATCAAGGAGGCCTTGCCCATGAAGTTCATTGGGATGAATTGCATGTTAATGA 863828 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266 ||||| ||||| || |||||||| ||| || | || | || | | ||| | Sbjct 863827 AGCAGTATATTGAGTTCGTGGCAGACCGACTTATGCTGGAGCTAGGTTTTGGCAAGGTTT 863768 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACT 102326 || || || || | ||||| |||||||| || || ||||| |||| Sbjct 863767 TCGGAGTAGAAAATCCATTTGACTATATGGAGAATATTTCACTGGAAGGGAAGACTAACT 863708 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 | |||| |||||||| | ||||||||| Sbjct 863707 TCTTTGTGAAGAGAGTAGGCGAGTATCA 863680 >seq148 Length=4816872 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || |||||||| || ||||||||||||||| |||| | || || || || |||| Sbjct 2362274 TTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCT 2362215 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||||| |||||||| Sbjct 2362214 GGCTCAAGAAACGCGGCCTGATGCCTGGCCTCACCTTTTCCAATGA 2362169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989534640477815