Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odobenus_20rosmarus_20divergens_20[refseq_20GCF_5F000321225.1_202013 -01-16] 3,893 sequences; 2,400,150,193 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1020 369 5e-97 seq417 244 1e-59 seq3 125 9e-24 seq158 111 2e-19 seq148 111 2e-19 seq1031 102 1e-16 >seq1020 Length=850931 Score = 369 bits (408), Expect = 5e-97 Identities = 647/939 (69%), Gaps = 10/939 (1%) Strand=Plus/Minus Query 33231 TTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCC 33286 ||||| ||| |||||| |||| || | |||| ||| ||| | || ||||| | ||| Sbjct 339111 TTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCATTCC 339052 Query 33287 CATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATAT 33346 ||| | || ||||| || || | || || ||| ||||| || ||||||| ||| || Sbjct 339051 CATCCTCTGATATTCGCCTACTCTCTTCTC---AAAGTTAGTCTTCCCTTCCAGTGAAAT 338995 Query 33347 ATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGA 33406 ||| ||||| || ||||| ||||| || || ||| || ||| || | || Sbjct 338994 ATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAG 338935 Query 33407 AATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33466 || | || ||||| ||||| || ||||| ||||| | | |||||||| || || Sbjct 338934 CATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAATGTGCAATTCATCCCAAT 338875 Query 33467 GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 ||| || || || | ||| | || || || || || || || || ||||| | || Sbjct 338874 GAGCTTCACAGGCAAGGCCTCCGTGAGGAACTCCTGCTCTATCCGAACGGCATTAATAAT 338815 Query 33527 AATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGC 33586 || | || | | || ||| || | | ||||| ||||||| || || Sbjct 338814 TATTTCCTTCACTCTCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAACATCAGGCAGGC 338755 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || || ||||| | |||||| ||||| ||| | | ||| || ||||| | ||| || || Sbjct 338754 AAAGTCACAGTGTAAACCCTCATCTCTGCTAGTAAGTTCATTGGAAAAGGCGAGGCCAGG 338695 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||| |||||||| || || ||||| ||||| || || || || || ||||||| |||||| Sbjct 338694 CATCAGGCCACGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAGGATTCC 338635 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCA 33763 ||| || |||||||| || | || | || || || ||| | |||| |||| Sbjct 338634 TTCCACAGCAGCAAAAGCCACAACCCGTTCCCCGTAGGTACCCTCTTTGTCCCCAGTCCA 338575 Query 33764 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 | |||||||| |||||||| |||||||||||||| || || ||||| || ||||| Sbjct 338574 ATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCGTTGAAGAG 338515 Query 33824 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33883 | | | |||| || |||||||| |||||| || | | ||||| ||||| || || Sbjct 338514 AAATTCCCTTTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTGTACATCTCAGA 338455 Query 33884 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 33943 ||| |||||||| ||||| | || || | |||||||| | || || |||||||| || Sbjct 338454 ATGGATGTTTTCCATGGCAAATTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAAC 338395 Query 33944 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAA 34003 |||| | ||| || || | || |||||||| || || |||||||| |||||||| || Sbjct 338394 TTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACGATGCCATCACTCGCTGCAAAGAA 338335 Query 34004 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 34063 |||| || || |||||| ||| | || || || | || | ||| | | || Sbjct 338334 AGCCAGAACGTGGGATATAAAGTATCTCTCCTCAGGCTTCAGGGATTCCCAGTGCTGAAT 338275 Query 34064 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 || || || | |||||| | ||| |||||||||| || ||||| || || |||||| | Sbjct 338274 GTCCTTGGAAAGATCCACCTTTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACCT 338215 Query 34124 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | ||| || ||| || | ||| ||||| || ||||| Sbjct 338214 CTGCCAAATATCACAGTACTCGATGGGGAAGATGACAAA 338176 >seq417 Length=2207251 Score = 244 bits (270), Expect = 1e-59 Identities = 497/736 (68%), Gaps = 29/736 (4%) Strand=Plus/Plus Query 33230 GTTTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTC 33285 |||||| ||| |||||| |||| || | |||| ||| ||| | || ||||| | || Sbjct 863612 GTTTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCATTC 863671 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 |||| | || || || || || | || | || || ||||| || ||||||| ||| | Sbjct 863672 CCATCCTCTGATACTCGCCTACTCTCTTCACAAAGAAGTTAGTCTTCCCTTCCAGTGAAA 863731 Query 33346 TATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAG 33405 |||| ||||| | ||||| ||||| || | ||| || ||| || | || Sbjct 863732 TATTCTCCATATAGTCAAATGGATTTTCTACTCCGAAAACCTTGCCAAAACCTAGCTCCA 863791 Query 33406 AAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA 33465 || | || ||||| ||||| || ||||| ||||| | |||||||| || | Sbjct 863792 GCATAAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACATGCAATTCATCCCAA 863851 Query 33466 TGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTA 33525 ||| || | || | ||| | | | ||| | || || || || ||||| Sbjct 863852 TGAACTTCATGGGCAAGGCCTCCTTGATGAATCCCTGCTCTATCTGAACGGCATT----- 863906 Query 33526 TAATAAATCTAACGGTTTCTTCACTCGGTG----GA-------TGTAATAAATGTTTAAA 33574 ||||| | | || |||||||| || || || | | ||||| || Sbjct 863907 -AATAATTAT-----TTCCTTCACTCCCTGCTCGGAAGGTTTGTGGACCAGGTGTTTGAA 863960 Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 ||||| || || || || ||||| | |||||| ||||| ||||| | ||| || ||||| Sbjct 863961 CATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAA 864020 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 |||||| || ||||| |||| || || || ||||| ||||| || | || || || || Sbjct 864021 CGTGAGGCCAGGCATCAGGCTGCGTTTCTTGAGCCAGAATATCGACTCAAAAGAACCAGA 864080 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCT 33751 ||||||||||||||| || ||||||||| | | || | || || || | | | | Sbjct 864081 AAAGAAGATTCCTTCCACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTT 864140 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 ||| ||||| ||||| | |||| ||| |||||||||||||| || || || Sbjct 864141 GTCCCCGATCCAACGCAAGGCCCAGGCTGCCTCCTTCTTTACACAAGGCATTGTCTCCAT 864200 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 ||| || |||||| | | |||| | |||||||| ||||| || || | ||||| Sbjct 864201 GGCGTTGAAGAGAAATTCCCTTTCTTCGGAATCTTTAATGTAAGTGTCAATGAGGAGACT 864260 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 |||||| || |||||||||||||| |||| || || || || |||||||| | || || Sbjct 864261 ATACATCTCAGAATGAATGTTTTCCATGGTAATTTGGAAGCCATAGAAACAGCGGGCTTC 864320 Query 33932 GGTAATCTGCACTTCT 33947 |||||||| |||||| Sbjct 864321 TGTAATCTGAACTTCT 864336 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33970 TTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 34029 ||||||| || || || |||| | ||||| || |||| ||||| |||||| ||| Sbjct 864553 TTTCATTTACCATGCCGGCACTCGGCGCAAAGAAAGCCAGAACATGGGATATAAAGTATC 864612 Query 34030 TTTCGTCTGGTGTTAGTTTATTCCAATCATTGA-TATCTTTAGATATATCCACTTCTTCC 34088 | || || || | || ||||| ||| | || || || | |||||||||||| Sbjct 864613 TCTCCTCAGGCTTCAGGG-ATTCCCGCGGCTGAATGTCCTTGGAAAGATCCACTTCTTCA 864671 Query 34089 ACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATT 34148 |||||||||| || ||||| || || |||||||| | ||| || ||||| || | ||| Sbjct 864672 GCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTACTCGATA 864731 Query 34149 GGGAAAATAACAAA 34162 ||||| || ||||| Sbjct 864732 GGGAAGATGACAAA 864745 >seq3 Length=9835568 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 152606 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 152665 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 152666 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 152725 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 152726 CTGTTTCTTATACCATA 152742 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 150104 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCGATGTGGATGT 150163 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 150164 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 150223 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | |||| ||||||||| | || ||||||| | |||| | || || |||| Sbjct 150224 TCTGTGAAATTTCCCACACGGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 150274 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 157356 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 157415 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| || || ||||| || || ||||| |||| Sbjct 157416 AATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 157475 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || || || || || || | ||| | Sbjct 157476 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 157535 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 157536 GTTTATTTGA 157545 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 162117 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 162176 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 162177 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCA 162236 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 162237 AGGCTCCAGGTAAATAGC 162254 >seq158 Length=7371824 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || |||||||||||||||||||| || || | || || Sbjct 3463986 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 3463927 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||| || Sbjct 3463926 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 3463867 Query 33726 ATAAGTCTCTCTCC 33739 | || ||| || || Sbjct 3463866 ACAACTCTTTCCCC 3463853 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| || || ||||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 3453372 CACCTCCTCAGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 3453313 Query 34139 ATATTGGATTGGGAAAATAACAAATC 34164 ||||||||||| || || ||||||| Sbjct 3453312 GTATTGGATTGGAAAGATGACAAATC 3453287 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || |||| || |||||| Sbjct 3458694 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 3458635 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || || | | | || || ||||| | | || ||| || |||| Sbjct 3458634 TACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 3458586 >seq148 Length=4816872 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| ||||| || || | Sbjct 2362149 CCTCATCTCTGCTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGGCCGCGTTTCT 2362208 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || |||||||| | Sbjct 2362209 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2362268 Query 33724 C 33724 | Sbjct 2362269 C 2362269 >seq1031 Length=1524375 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||| | | ||| || | ||||| || || |||||||||| || ||| Sbjct 517172 GTTACTTTCTATGACGTGTATATTATTCTCCAAGCATTTATACTGACTACTGCTGTATTT 517231 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || ||||||||| || |||||||||||||| ||| ||| | |||| Sbjct 517232 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 517290 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||||||||||||||| |||||||||| ||||| ||||| || ||||| |||||| Sbjct 497674 TGCTCCTCCATCGAGGACGATTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGCAC 497733 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 497734 ATCCGAATGG 497743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629786951501040